RNA id: TU132344


Basic Information

Item Value
RNA id TU132344
length 380
lncRNA type intronic
GC content 0.48
exon number 3
gene id G115252
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 14292759 ~ 14297388 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accttctacatgttagaacgctgagctacgacctcaccttctacatgttagaacgctgagctacgacctcaccttctacatgttagaacgctgagctacgacctcaccttctacgtgttagaacgctgagctacgacctcaccttctacgtgttagaacgctgagctacgaccttctacatgttagaacgctgagctacgaccttctacgtgttagaacgctgagctacgaccttctacatgttagaacgctgagctacgaccttctacatgttagaacgctgagctacgaccttctacatgttagaacgctgagctacgaccttctacatgttagaacgctgagctacgaccttctacatgttagaacgctgagctacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132307 lncRNA upstream 89817 14199253 ~ 14202942 (+) True G115216
TU132248 lncRNA upstream 116866 14066024 ~ 14175893 (+) True G115170
TU132238 lncRNA upstream 121189 14061335 ~ 14171570 (+) True G115162
TU132289 lncRNA upstream 124356 14166664 ~ 14168403 (+) True G115198
TU132229 lncRNA upstream 131519 14051656 ~ 14161240 (+) True G115155
TU132136 lncRNA downstream 20160 14317548 ~ 14318010 (+) True G115081
TU132354 lncRNA downstream 37769 14335157 ~ 14335397 (+) True G115262
TU132355 lncRNA downstream 38323 14335711 ~ 14335955 (+) True G115263
TU132129 lncRNA downstream 65834 14363222 ~ 14364303 (+) True G115077
TU132138 lncRNA downstream 67251 14364639 ~ 14366242 (+) True G115083
XM_036962057.1 mRNA upstream 62557 14109544 ~ 14230202 (+) False LOC110513267
XM_036962053.1 mRNA upstream 62557 14212414 ~ 14230202 (+) False LOC110513267
XM_036962061.1 mRNA upstream 62557 14220426 ~ 14230202 (+) True LOC110513267
XM_036961858.1 mRNA upstream 157713 14087019 ~ 14135046 (+) False LOC110535435
XM_036961867.1 mRNA upstream 157713 14087019 ~ 14135046 (+) False LOC110535435
XM_036962071.1 mRNA downstream 42102 14339490 ~ 14343217 (+) True LOC110490457
XM_021617848.2 mRNA downstream 47503 14344891 ~ 14356726 (+) True LOC118936243
trnat-ugu mRNA downstream 111278 14408666 ~ 14408738 (+) True trnat-ugu
XM_036962002.1 mRNA downstream 133513 14430901 ~ 14497781 (+) False galnt1
XM_036962004.1 mRNA downstream 133513 14430901 ~ 14497781 (+) True galnt1
TU132280 other upstream 55905 14234514 ~ 14236854 (+) True G115189
TU132281 other upstream 148492 14141882 ~ 14144267 (+) True G115190
TU132139 other upstream 329947 13961261 ~ 13962812 (+) True LOC110535330
TU131892 other upstream 583385 13701610 ~ 13709374 (+) False LOC110520780
TU131856 other upstream 668794 13621977 ~ 13623965 (+) True LOC110520769
TU132383 other downstream 108656 14406044 ~ 14407912 (+) True G115289
TU132480 other downstream 259067 14556455 ~ 14565113 (+) True sec61b
TU132987 other downstream 456235 14753623 ~ 14770903 (+) False stx17
TU132969 other downstream 563332 14860720 ~ 14865283 (+) False si:ch211-197h24.6
TU132970 other downstream 564398 14861786 ~ 14865283 (+) False si:ch211-197h24.6

Expression Profile