RNA id: TU132354


Basic Information

Item Value
RNA id TU132354
length 241
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G115262
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 14335157 ~ 14335397 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggAACATCAGAAGTTGGaaggaaatgaactatattctggtaatccgaccaattgaacatatgcggtggtactttaatgaatatgatgtcagttctgttgtcatctgagacattctcatcaatgataagatgacataaactctaccgtggaaagtctacacatcagagttatcggattcacatggaattgttgttcaatttaaatgtttgaatatgaaattattcgtgatgggatgaaatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132136 lncRNA upstream 17147 14317548 ~ 14318010 (+) True G115081
TU132344 lncRNA upstream 37769 14292759 ~ 14297388 (+) True G115252
TU132307 lncRNA upstream 132215 14199253 ~ 14202942 (+) True G115216
TU132248 lncRNA upstream 159264 14066024 ~ 14175893 (+) True G115170
TU132355 lncRNA downstream 314 14335711 ~ 14335955 (+) True G115263
TU132129 lncRNA downstream 27825 14363222 ~ 14364303 (+) True G115077
TU132138 lncRNA downstream 29242 14364639 ~ 14366242 (+) True G115083
TU132364 lncRNA downstream 40224 14375621 ~ 14375857 (+) True G115271
TU132367 lncRNA downstream 46216 14381613 ~ 14381824 (+) True G115274
XM_036961838.1 mRNA upstream 18938 14240232 ~ 14316219 (+) False LOC110535510
XM_036961851.1 mRNA upstream 20526 14245318 ~ 14314631 (+) False LOC110535510
XM_036961843.1 mRNA upstream 20526 14262050 ~ 14314631 (+) True LOC110535510
XM_036962057.1 mRNA upstream 104955 14109544 ~ 14230202 (+) False LOC110513267
XM_036962053.1 mRNA upstream 104955 14212414 ~ 14230202 (+) False LOC110513267
XM_036962071.1 mRNA downstream 4093 14339490 ~ 14343217 (+) True LOC110490457
XM_021617848.2 mRNA downstream 9494 14344891 ~ 14356726 (+) True LOC118936243
trnat-ugu mRNA downstream 73269 14408666 ~ 14408738 (+) True trnat-ugu
XM_036962002.1 mRNA downstream 95504 14430901 ~ 14497781 (+) False galnt1
XM_036962004.1 mRNA downstream 95504 14430901 ~ 14497781 (+) True galnt1
TU132280 other upstream 98303 14234514 ~ 14236854 (+) True G115189
TU132281 other upstream 190890 14141882 ~ 14144267 (+) True G115190
TU132139 other upstream 372345 13961261 ~ 13962812 (+) True LOC110535330
TU131892 other upstream 625783 13701610 ~ 13709374 (+) False LOC110520780
TU131856 other upstream 711192 13621977 ~ 13623965 (+) True LOC110520769
TU132383 other downstream 70647 14406044 ~ 14407912 (+) True G115289
TU132480 other downstream 221058 14556455 ~ 14565113 (+) True sec61b
TU132987 other downstream 418226 14753623 ~ 14770903 (+) False stx17
TU132969 other downstream 525323 14860720 ~ 14865283 (+) False si:ch211-197h24.6
TU132970 other downstream 526389 14861786 ~ 14865283 (+) False si:ch211-197h24.6

Expression Profile