RNA id: TCONS_00029956


Basic Information

Item Value
RNA id TCONS_00029956
length 3561
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_014129
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 30832290 ~ 30836205 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATCATTGATCCAACGCCGTCTTCGTTTGGTCATACCGACCGCTCGTCATTTCCAAATGGATTGCAGACATCCTCATGTGACCTGACAAAATGAATCAACCTGCCAACAGAAGAGCCACAAAACCACAAAGCTGACTGGATAAATAGCCTCCATTCCAGCAGAGGAACAGCCTTTCAACGGAGACCTACTGGAATGCAGCTGGTGTTAACAGAGAAGCTACAAATCTGACCTGCAGTCTGTTCGAAATCAAGATTAGCCTTACAAAGAGCAGCGTTCAGCCAGGATGGTCCAGATGACCCAAGGTGACCTGTCCTAAAACGAGATGGACCCTAGTATATCAACACAATGTGCAGACAATGGTAGCGGTATCTGGCCTCAATGCTCATAAATATCAGTTCAGTGTAGTCATTGGAAATACCatcctgatctcacgaggaaacagaactattttacattttgtcagtttagaatTCATGCATAGAATTCATtcgtacgatttttaaaaggaagccTGGCAccgaaccccacccctaaacccaaccatcattggaagGTTAGCAAATTGCACTAAAAGGTATGAACGGGATCAtacaaatttatatgaattagcaactaaatcaaaaagttatagaTTGGCGTAAGATACCATTGGAAATACATATttcagtctacatttttgtgaatccacaaaaaaaaatatataataaatacatcgACATATATTTGACTGTAGTTTCTGGGTAAAATGTATGTAACAGGGCAGTAGGACATCTTACATCATTCTTACACActgtggctcggtggttagcactgtcgcctcacagcaagaaggtcactggtttgttggtcagttagcatttctgcgtgaagtttgaatgttttccccatgcttgtgtgggtttcctccgggtgctccggtttcccccacagtccaaagacatgcagtataggtgaattggatgaactaaactggctgtagtgcatgagtgtgagagtgtatgtgttttctagtgctgggttgcggttggaaaggcatctactgtgtaaaacttatgtcggaatagttggtggttcattccactgcggtcgaagtcaaaggaaaattaataaatgattgatGTATAAAGGATTTGttttgtgcagttctttgcacaataccaaacaaacaaatgacacaaaacaacacaacagtTGATATGATTAATAATTGAATACATTTGCCTCATCTATCTATCTCCATAAGGATAATTTTTTTTGGTCAGTTTGCTCAGAATAGCTCAGTTTTTGTTGTGCTTCAATACAAAGCAATTTGTTTGATTTATCTAAAACAAgttccacaaaagagataaaagtaATGTATCAAGTTCAAACTATTCAATCGCAGCAGacttttctcttacatttgctttcgaaaacactattggttgggtttagatcagtggttcaaTATATATCAACTATACTACAAGCCCCGCCTTCTCATAGATGTGTACAAGAAAGACATGTacctgaaatgtacaacaaaatgtacccgaagcaatgtttttcagatttgcaaaaatgtagacagcgcccacTAGAGGATCTGAAACATGCGTCGAAATGTACCCGAAGCAAAGTATTTATACAAATgtgttttcacaaaaatgtaggccgAGGcaagtatttccaatgagcctggctATCCTACAAGCATTTTCATTCTCATACTCTCATACTCATACTTTTTGAGAATTCTAATGCTTTCACCAAAAGTGTTTAAGCTGTTATTTGTGCACCCACAAATATTTAGTGGTTTTTTAAAgcacaattaaatatttaaagctgAAACCGTGGTCTATTATGATTCATAAAAATGCAAGTCCACAACTTCTGGCAATATGAGAGGCCTAAAAGCATACGGTGTACTGAACAGTAAGAACAGGAAGAAACttaaaattattaacaaaatgataaccttaaattattatattaatattgccTTAGCAAACTTCCTTCATTTGCAACCACAAGCTACTGCTATTTATTTAACAAGAGAAAAACTCATTCTCATTTTTTGTCAAATGAATGAAGTTTCAACAGTGTCCACAAACATCAGTTCAATTTCAAGTCTTCAACAAAGCAGCACAGGCTCTGTGTTTATACTgtgggaaaaaaatgaaaaaggcattgggtttactcacttttttaaagttaagtcCACTGTTtaaagggtggcacggtggctcagtggttaaaaggtcactggttcgagtccagatTGGGCCAGTCGgaattcctgtgtggagtttacatgttttccccattttcgcataggtttcctctaggtacagtccaaagacatacggtgtactgggttgcagctggaagggcatccactgtgtaaaacatatgttggaatagttagtggtccattccgctgtggtgacccctgacaactaagagaataagctgaaggaaaatgaataaaggaagtCAACTGTTCATTACTGTTTTAGACAAAGTGCACATTTAACATAGCGCAAACTCAAATATAGTGTAAACATTGATCCATGACATCAAAATGCTCTTTCTAGCAGCAAGGGTTAAAAGGCAAAACAATTGTTGTTCATACTTGCTCCTAATCAGTTTGCAAGGAAAACCCAGGAGAAGGGAAAAGGTCTATATCCATGTCCAAACCAAATATGTTGTTTATTTGAGCAACGATTCTGCACAAATGGGCCTGAATCACCTGACAGTCTCGTTTGCAATGAATATGATCCCCTATATTTAATTTGCATAGAGGTGAGCGGGTTTGTTGTATTTAGGTCTTAAATAAGGTGTGATATGATTTCTGTGAAGGATCCTGAGTTGAATGGCTCTGGCCCTGTTGCAAACTGAAAGCTTATTGGCTAGAGACCAAACCATCTCATATTCTTCTTCCAAGGTATCCACTTCAAGCTCTTTTTCCCAAATTGATCTGAGATGTGAGTTACAGAGAGTGTTATAAGAGCACCTGATATTATACCCAAATCTAATGATGATCTGTGCCAGAAACTGAACATAACTCTCAACTTTATTCCACAGCCTCTGTCAAATTTTACTTCATTTGTAACCACAATCTATTTTGTGCTGTTAAACATGGGCACAAACATTTTACTAAAACggaaaagaacatttaaaaacacataatatttaaaaaataaaaagattttactgtaatcaaaatagtttttttccccATTTGATTCAGTTTAAAGGTTGCTTTTATTGAAATGCAGTTCAAGAAAACAGCCAAAGAAGAAAACAGCTGTTGCCTTGCCAGAAGACAATTGCTTCCTATGTGCTCACAGCGGGAGAAAACTACTGTTTTGTTGTTGCATAGGGGaacgtctgtgtgtttgtgtgtgcctgtTTAGCAAGGAGGATCAAAGTCAGGACAATAATGTACATTACACCAAAATAGTTGCAAATTGCTGTGCTAAAAACATTGAGTCACATGGGGGTCTTGACTGGAAGTGGCTTATCTTCTAAATTGCTAAGAATATCTAGGGACCTTGGGGGTTTTATTGTGGACAAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029955 lncRNA upstream 30302 30800052 ~ 30801988 (+) True XLOC_014128
TCONS_00029723 lncRNA upstream 106587 30724996 ~ 30725703 (+) True XLOC_014127
TCONS_00028144 lncRNA upstream 242339 30587866 ~ 30589951 (+) False XLOC_014124
TCONS_00028143 lncRNA upstream 242339 30587866 ~ 30589951 (+) True XLOC_014124
TCONS_00029954 lncRNA upstream 1016558 29808713 ~ 29815732 (+) False XLOC_014117
TCONS_00029724 lncRNA downstream 5434 30841639 ~ 30843233 (+) True XLOC_014130
TCONS_00029725 lncRNA downstream 132807 30969012 ~ 30970025 (+) True XLOC_014133
TCONS_00029957 lncRNA downstream 302622 31138827 ~ 31153090 (+) True XLOC_014137
TCONS_00029958 lncRNA downstream 321442 31157647 ~ 31218099 (+) False XLOC_014138
TCONS_00029959 lncRNA downstream 414715 31250920 ~ 31348348 (+) False XLOC_014139
TCONS_00028147 mRNA upstream 147416 30662529 ~ 30684874 (+) True XLOC_014126
TCONS_00028146 mRNA upstream 148612 30633453 ~ 30683678 (+) False XLOC_014126
TCONS_00028141 mRNA upstream 315610 30495109 ~ 30516680 (+) True XLOC_014122
TCONS_00028140 mRNA upstream 364056 30450125 ~ 30468234 (+) True XLOC_014121
TCONS_00028139 mRNA upstream 403389 30423117 ~ 30428901 (+) True XLOC_014120
TCONS_00028148 mRNA downstream 31640 30867845 ~ 30884054 (+) False XLOC_014131
TCONS_00028150 mRNA downstream 48501 30884706 ~ 30895272 (+) False XLOC_014132
TCONS_00028151 mRNA downstream 48755 30884960 ~ 30891182 (+) False XLOC_014132
TCONS_00028152 mRNA downstream 48778 30884983 ~ 30895273 (+) False XLOC_014132
TCONS_00028154 mRNA downstream 48783 30884988 ~ 30891369 (+) False XLOC_014132
TCONS_00028145 other upstream 201230 30630943 ~ 30631060 (+) True XLOC_014125
TCONS_00028142 other upstream 313717 30518455 ~ 30518573 (+) True XLOC_014123
TCONS_00028136 other upstream 971956 29859036 ~ 29860334 (+) True XLOC_014118
TCONS_00028134 other upstream 972084 29854249 ~ 29860206 (+) False XLOC_014118
TCONS_00028123 other upstream 1511407 29303847 ~ 29320883 (+) False XLOC_014112
TCONS_00028149 other downstream 43583 30879788 ~ 30882456 (+) True XLOC_014131
TCONS_00028153 other downstream 48779 30884984 ~ 30887251 (+) False XLOC_014132
TCONS_00028157 other downstream 49107 30885312 ~ 30891010 (+) True XLOC_014132
TCONS_00028165 other downstream 505818 31342023 ~ 31348348 (+) True XLOC_014139
TCONS_00028174 other downstream 751726 31587931 ~ 31590491 (+) True XLOC_014142

Expression Profile

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