RNA id: TU132138


Basic Information

Item Value
RNA id TU132138
length 1563
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G115083
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 14364639 ~ 14366242 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccctccaaGTTACTtctgaaataaagaaaaacacataCAATTAAAATACATAAACTGCGATTGAAAAagcatttaaaaacattacagaTATAGTCAGTTAGTTTCATTGATTGCTATATTTAAAATGAATCTATATGGTATGAACACCAATAAGGAACGTGGAGTTGGCCTCATATAGAAATACTGGGGAGCTTGCTTGCATGGACTGAAATTTTAAAACCATAGAAATCAATGACTTGGGGATACTTGTGAGAAATAGGTCTAAAATAAAATGACAGACATAGGGGCCCATTAAAAAAGATATATCATATTTCTGTAAAAACGATTCTGGCATTACTGTTCCCTTTCCTTACTAAAGAGTTTGAATTTAATCATATTGTCATTCCTTAAACTGGCTAATAAATGATGTCGACTTTTAAAACGATTTCTTCCGGTTAAATAATGTAACTGTACTTGGGTTTGACTGTAAATAACTGGATAAATATTGTTCTTCAACTCCCAAACCATTTTTTAGAGAGAGATTAGATACAGCATTTTGCATAGCTGGAGCCATCTTGATAAGATGCAAGTACAGATAGGTGCTCATCCCAGTAACACTGAGAAATGCAGGAATGACAGTCAGTGGTAAGGCAATACAGTGATCTTAAAATCTCATAATAGTCTATTCcaggactctccaaccctgttcctggagagataccctcctgtaggttcactccaaccccgttcctggagagataccctcctgtaggttcacactccaaccctaatctaacacacctgattctaataattacaTGGTTATAAACTGAACCAgattagttacaactggggttggagtgaaaagcTACAGGAggatagatctccaggaacagggttggtgaaaacctacaggaggatagatctccaggaacagggttggagtgaaaacctacaggaggatagatctccaggaacagggttggtgaaaacctacaggaggatagatctccaggaacagggttggtgaaaacctacaggaggatagctctccaggaacagggttggagtaaaaAGCTACAGGAggatagatctccaggaacagggttggagtgaaaagcTACAGGAggatagatctccaggaacagggttggagagccttgGTCCATTTCTATCAATGAGTGGTCCCATTCCAAGCAGCTCCATGGTCCAAGGAAACAGAATGTATACAACACAGACCATGTCTCCTACAAAAATGGTCCCACTGCTAAGAATAAAAGCTCTGAATAAGCTGTTAAAACTACTGGAGATTCCTTTCCTTCCTTTAAGCAGATATAAGGTGGCCCTCTGATAGTCTTAGTGTGTTGCCTGTTTGCGTGTGTAAATGTGGGAGAAAGAGACACCAGTGTTACACTCGTTAGGTATCCCTGGGCCTAGTCTGCTTCGTTCTGTTCCCTGTTGAGTTTCTCGGCCTCTGCCACAGGGGCCCCACCGTTGCTTGCGGCTTGCTGGTTGGTCTTTTTAAAAGGAAAACCCCTGGTCTTCACAAACCAGCCAGCATCCACCAGGAATGCCACAGTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132129 lncRNA upstream 336 14363222 ~ 14364303 (+) True G115077
TU132355 lncRNA upstream 28684 14335711 ~ 14335955 (+) True G115263
TU132354 lncRNA upstream 29242 14335157 ~ 14335397 (+) True G115262
TU132136 lncRNA upstream 46629 14317548 ~ 14318010 (+) True G115081
TU132344 lncRNA upstream 67251 14292759 ~ 14297388 (+) True G115252
TU132364 lncRNA downstream 9379 14375621 ~ 14375857 (+) True G115271
TU132367 lncRNA downstream 15371 14381613 ~ 14381824 (+) True G115274
TU132369 lncRNA downstream 20868 14387110 ~ 14387543 (+) True G115276
TU132379 lncRNA downstream 37408 14403650 ~ 14404285 (+) True G115286
TU132385 lncRNA downstream 42805 14409047 ~ 14409701 (+) False G115290
XM_021617848.2 mRNA upstream 7913 14344891 ~ 14356726 (+) True LOC118936243
XM_036962071.1 mRNA upstream 21422 14339490 ~ 14343217 (+) True LOC110490457
XM_036961838.1 mRNA upstream 48420 14240232 ~ 14316219 (+) False LOC110535510
trnat-ugu mRNA downstream 42424 14408666 ~ 14408738 (+) True trnat-ugu
XM_036962002.1 mRNA downstream 64659 14430901 ~ 14497781 (+) False galnt1
XM_036962004.1 mRNA downstream 64659 14430901 ~ 14497781 (+) True galnt1
XM_036962200.1 mRNA downstream 190155 14556397 ~ 14565113 (+) False sec61b
XM_036961990.1 mRNA downstream 343680 14709922 ~ 14741860 (+) False nr4a3
TU132280 other upstream 127785 14234514 ~ 14236854 (+) True G115189
TU132281 other upstream 220372 14141882 ~ 14144267 (+) True G115190
TU132139 other upstream 401827 13961261 ~ 13962812 (+) True LOC110535330
TU131892 other upstream 655265 13701610 ~ 13709374 (+) False LOC110520780
TU131856 other upstream 740674 13621977 ~ 13623965 (+) True LOC110520769
TU132383 other downstream 39802 14406044 ~ 14407912 (+) True G115289
TU132480 other downstream 190213 14556455 ~ 14565113 (+) True sec61b
TU132987 other downstream 387381 14753623 ~ 14770903 (+) False stx17
TU132969 other downstream 494478 14860720 ~ 14865283 (+) False si:ch211-197h24.6
TU132970 other downstream 495544 14861786 ~ 14865283 (+) False si:ch211-197h24.6

Expression Profile