RNA id: TU132386


Basic Information

Item Value
RNA id TU132386
length 514
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G115290
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 14409047 ~ 14409701 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaaaaAACAGGTAACAATATGTTGAGTGTTATCTTACAGAGGGCAGATAAAACAAGTAGCAACACTATCATCATACAGCAACATAACAAACAAATATGATTACAGACAGATCAAGGAGCAATCATCATAGGAAGGTCAAGTTATTCACTCTATTGTTTTTCCTGTAGACAGCCAACTCAGATGTGTAGACAGGTAGCTAGCTCAAAAGGTCTGTGTAGACAATAGCTAGCTCAAAAGGTCTGTGTAGACAGTAGCTAGCTCAAAATGTCTGTGTAGACAGTAGCTAGTTCAAAATGTCTGTGTAGACATCCCCATCATGACGTTAGCCAGATTGGGAGTGATAGTCTCTCGACACTAGAGGCGCTTCCTTTGTTgtcgaaaggcggccaaaggtaTCCATTGgatccctctctctgtaacaGTCCCTGTTGGTCCCTCTCCCTGAGAGTCCCAGACACCTCCTAGACATTGTTCCCCATGATGGTTTAATGTCCCTCCCAGGCCATGACAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132379 lncRNA upstream 4762 14403650 ~ 14404285 (+) True G115286
TU132369 lncRNA upstream 21504 14387110 ~ 14387543 (+) True G115276
TU132367 lncRNA upstream 27223 14381613 ~ 14381824 (+) True G115274
TU132364 lncRNA upstream 33190 14375621 ~ 14375857 (+) True G115271
TU132138 lncRNA upstream 42805 14364639 ~ 14366242 (+) True G115083
TU132436 lncRNA downstream 61497 14471198 ~ 14471972 (+) True G115322
TU132440 lncRNA downstream 66839 14476540 ~ 14477029 (+) True G115325
TU132442 lncRNA downstream 80824 14490525 ~ 14492214 (+) True G115327
TU132413 lncRNA downstream 92121 14501822 ~ 14502570 (+) True G115302
TU132445 lncRNA downstream 94965 14504666 ~ 14505538 (+) False G115330
trnat-ugu mRNA upstream 309 14408666 ~ 14408738 (+) True trnat-ugu
XM_021617848.2 mRNA upstream 52321 14344891 ~ 14356726 (+) True LOC118936243
XM_036962071.1 mRNA upstream 65830 14339490 ~ 14343217 (+) True LOC110490457
XM_036961851.1 mRNA upstream 94416 14245318 ~ 14314631 (+) False LOC110535510
XM_036962002.1 mRNA downstream 21200 14430901 ~ 14497781 (+) False galnt1
XM_036962004.1 mRNA downstream 21200 14430901 ~ 14497781 (+) True galnt1
XM_036962200.1 mRNA downstream 146696 14556397 ~ 14565113 (+) False sec61b
XM_036961990.1 mRNA downstream 300221 14709922 ~ 14741860 (+) False nr4a3
XM_036961983.1 mRNA downstream 300228 14709929 ~ 14744937 (+) False nr4a3
TU132383 other upstream 1135 14406044 ~ 14407912 (+) True G115289
TU132280 other upstream 172193 14234514 ~ 14236854 (+) True G115189
TU132281 other upstream 264780 14141882 ~ 14144267 (+) True G115190
TU132139 other upstream 446235 13961261 ~ 13962812 (+) True LOC110535330
TU131892 other upstream 699673 13701610 ~ 13709374 (+) False LOC110520780
TU132480 other downstream 146754 14556455 ~ 14565113 (+) True sec61b
TU132987 other downstream 343922 14753623 ~ 14770903 (+) False stx17
TU132969 other downstream 451019 14860720 ~ 14865283 (+) False si:ch211-197h24.6
TU132970 other downstream 452085 14861786 ~ 14865283 (+) False si:ch211-197h24.6
TU132971 other downstream 453172 14862873 ~ 14865283 (+) True si:ch211-197h24.6

Expression Profile