RNA id: TU133012


Basic Information

Item Value
RNA id TU133012
length 1594
lncRNA type intronic
GC content 0.58
exon number 2
gene id G115756
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 14725401 ~ 14727994 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTCATCCTGTCATCCAATACAAGATCTAATGTCCATCCCATTTCATCCTGTCATCCAATACAAGATCTAATGTCCATCCCATTTCATCCTGTCATCCAATACAAGATCTAATGTCCATCCCATTTCATCCTGTCATCTTTAAAACGTGGTCTTTCTGGTGGGTTTCATTTAGTTCGAtggaaacggagagagagaagtagagacaggagaaagaaaagaaagagacagagaaataaaAGGGACAGAAGGTACATAGAGATAATTGAATGAGGCCTGTGGTAGGTGGAAATGAATTATCCCTCTTTTCAATTAGTTTCacaatttgtttttatttagtaATTAATGAAAGCAGCGTCTGGTGGCTGCAGGccaggggctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggctttatGTCGTGGGCTCTGCGTCTGCTACACAGCTCAGCACCCAGACGCAGCCTGTCAACATCCCAcatcagccacacacacacacacacacacgcgcgcgcgcacacgcacgcacgcacacacagatgcacacacacgcacacacgcacacacgcacacacacacacacacacacaatttatgtTTATCCTGCACTTCAGTGATTCCAGTGCTCTGACAGTCAAAGCTAAACAGCCAGAAAACATTTGTACAACTTCGTCTACACAACATTGTCCCCACAACATCCACACAATATTATACACACAACAGCCACACAACATTATACACAAAAGGTTGTACAACCTTATCCATACAACATTATACAACAACAAGCACGCCATTAACCACACAATATTTACACAACATTAAACACACAACATGTACACAAAGTTATCCACACAACATGTACACAACATTTTCCTAACAACTTTTACACAACATTTTCCTAACAACGTTTGCACAACATTCACCACATCTGCTAATTTCCAGACTACTGTCTAATGTTAGAGATAGGACTCAACAGGTGATGGCCACCATCTAATGTTAGAGATAGGACTCAACAGGTGATGGCCACCATCTAATGTTAGAGACAGGACTCAACAGGTGATGGCCACCATCTAATGTTAGAGACAGGAATCAGCAGGTGATGGCCACCATCTAATGTTAGAGACAGGAATCAGCAGGTGATGGCCACCATCTAATGTTAGAGACAGGAATCAGCAGGTGATGGCCACCATCTAATGTTAGAGACAGGAATCAGCAGGTGATGGCCACCATCTAATGTTAGAGACAGGACTCAACAGGTGATGTTTACTGTTTATGAATGCTCACCAGGACCAGTCTCTTAGAGGGAGTTATTAAGTTACACTGAGTGGATGAGCTTCATATTGTTCTCTGTGTTTTACGCACCATTAAATGCATTATCTCTAATTGTCTTTAATTCAATCTAATAGGGCATTCATGCATTATTGCCTTCATATTAGTAGTGTATGCAGAGTGTTATTAGTGATTTATTGTCATTTCATTTGTGAGTTATACATATTTTCACTAATGTGAATTAAAGAGATTTTCCTTTTGAATAAGTATTCATTTTTAATCAATGAATGAAGTATTACTTTTTGTTAACATAAATAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132965 lncRNA upstream 28874 14696090 ~ 14696527 (+) True G115725
TU132933 lncRNA upstream 81471 14643725 ~ 14643930 (+) True G115703
TU132508 lncRNA upstream 85783 14639244 ~ 14639618 (+) True G115371
TU132500 lncRNA upstream 108035 14603246 ~ 14617366 (+) True G115365
TU132497 lncRNA upstream 114749 14584449 ~ 14610652 (+) True G115363
TU133021 lncRNA downstream 20132 14748126 ~ 14748365 (+) True G115761
TU133023 lncRNA downstream 21941 14749935 ~ 14750266 (+) True G115763
TU132973 lncRNA downstream 43014 14771008 ~ 14775822 (+) True stx17
TU133044 lncRNA downstream 131840 14859834 ~ 14860568 (+) True G115784
TU132998 lncRNA downstream 142837 14870831 ~ 14871671 (+) False tmem67
XM_036962200.1 mRNA upstream 160288 14556397 ~ 14565113 (+) False sec61b
XM_036962002.1 mRNA upstream 227620 14430901 ~ 14497781 (+) False galnt1
XM_036962004.1 mRNA upstream 227620 14430901 ~ 14497781 (+) True galnt1
trnat-ugu mRNA upstream 316663 14408666 ~ 14408738 (+) True trnat-ugu
XM_021617848.2 mRNA upstream 368675 14344891 ~ 14356726 (+) True LOC118936243
XM_036962079.1 mRNA downstream 25461 14753455 ~ 14771262 (+) False stx17
XR_005039421.1 mRNA downstream 25461 14753455 ~ 14774468 (+) False stx17
XR_005039420.1 mRNA downstream 25463 14753457 ~ 14774468 (+) False stx17
XM_036962078.1 mRNA downstream 25466 14753460 ~ 14771262 (+) False stx17
XM_036961885.1 mRNA downstream 66208 14794202 ~ 14837595 (+) False LOC110535632
TU132480 other upstream 160288 14556455 ~ 14565113 (+) True sec61b
TU132383 other upstream 317489 14406044 ~ 14407912 (+) True G115289
TU132280 other upstream 488547 14234514 ~ 14236854 (+) True G115189
TU132281 other upstream 581134 14141882 ~ 14144267 (+) True G115190
TU132139 other upstream 762589 13961261 ~ 13962812 (+) True LOC110535330
TU132987 other downstream 25629 14753623 ~ 14770903 (+) False stx17
TU132969 other downstream 132726 14860720 ~ 14865283 (+) False si:ch211-197h24.6
TU132970 other downstream 133792 14861786 ~ 14865283 (+) False si:ch211-197h24.6
TU132971 other downstream 134879 14862873 ~ 14865283 (+) True si:ch211-197h24.6
TU133002 other downstream 149264 14877258 ~ 14878675 (+) True tmem67

Expression Profile