RNA id: TU133023


Basic Information

Item Value
RNA id TU133023
length 332
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G115763
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 14749935 ~ 14750266 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtaatagggttagaggcagagaatccaggtggaaagaggggaaccggccaggcagagacagcaagggcggttcgttgctccagagcctttccgtttaccttcacactcctgggccagactacactaaatcatatgacccactgaagagatgagtcttcagtaaagacttaaaggttgagaccgagtctgcgtctcttacatgggtaggcagaccattccataaaaatggagctctataggagaaagcctccagccgtttgcttagaaattctagggacaattaggaggcctgcgtcttgtgaccgtagcgtatgtgtaggtatgtacggcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133021 lncRNA upstream 1570 14748126 ~ 14748365 (+) True G115761
TU132959 lncRNA upstream 20863 14677278 ~ 14729072 (+) True G115720
TU133012 lncRNA upstream 21941 14725401 ~ 14727994 (+) True G115756
TU132965 lncRNA upstream 53408 14696090 ~ 14696527 (+) True G115725
TU132933 lncRNA upstream 106005 14643725 ~ 14643930 (+) True G115703
TU132973 lncRNA downstream 20742 14771008 ~ 14775822 (+) True stx17
TU133044 lncRNA downstream 109568 14859834 ~ 14860568 (+) True G115784
TU132998 lncRNA downstream 120565 14870831 ~ 14871671 (+) False tmem67
TU133045 lncRNA downstream 143434 14893700 ~ 14894908 (+) True G115785
TU133046 lncRNA downstream 144046 14894312 ~ 14894587 (+) True G115786
XM_036961983.1 mRNA upstream 4998 14709929 ~ 14744937 (+) False nr4a3
XM_036961979.1 mRNA upstream 4998 14709930 ~ 14744937 (+) True nr4a3
XM_036961990.1 mRNA upstream 8075 14709922 ~ 14741860 (+) False nr4a3
XM_036962200.1 mRNA upstream 184822 14556397 ~ 14565113 (+) False sec61b
XM_036962004.1 mRNA upstream 252154 14430901 ~ 14497781 (+) True galnt1
XM_036962079.1 mRNA downstream 3189 14753455 ~ 14771262 (+) False stx17
XR_005039421.1 mRNA downstream 3189 14753455 ~ 14774468 (+) False stx17
XR_005039420.1 mRNA downstream 3191 14753457 ~ 14774468 (+) False stx17
XM_036962078.1 mRNA downstream 3194 14753460 ~ 14771262 (+) False stx17
XM_036961885.1 mRNA downstream 43936 14794202 ~ 14837595 (+) False LOC110535632
TU132480 other upstream 184822 14556455 ~ 14565113 (+) True sec61b
TU132383 other upstream 342023 14406044 ~ 14407912 (+) True G115289
TU132280 other upstream 513081 14234514 ~ 14236854 (+) True G115189
TU132281 other upstream 605668 14141882 ~ 14144267 (+) True G115190
TU132139 other upstream 787123 13961261 ~ 13962812 (+) True LOC110535330
TU132987 other downstream 3357 14753623 ~ 14770903 (+) False stx17
TU132969 other downstream 110454 14860720 ~ 14865283 (+) False si:ch211-197h24.6
TU132970 other downstream 111520 14861786 ~ 14865283 (+) False si:ch211-197h24.6
TU132971 other downstream 112607 14862873 ~ 14865283 (+) True si:ch211-197h24.6
TU133002 other downstream 126992 14877258 ~ 14878675 (+) True tmem67

Expression Profile