RNA id: TU133094


Basic Information

Item Value
RNA id TU133094
length 203
lncRNA type antisense_over
GC content 0.38
exon number 1
gene id G115825
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 14956219 ~ 14956421 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTGATCCTCTCACGGCCAAGCCACTTCTTAAACTCCGCCCCCCAGTTCTGCACCAGGCTGCCAGGGGCAACCACCAGCACAAGCTTAGCAACCGGCTTCCCGCCGTATGGGCCCTGCTTTAGCAGCGTCCATGTCAAAGCCACGCTCTGGAGGGTCTTACCCAGACCCATCTCATCTGCCAGGATAGCACCGTACCTACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133092 lncRNA upstream 1326 14953626 ~ 14954893 (+) True G115823
TU133077 lncRNA upstream 18613 14937332 ~ 14937606 (+) True G115812
TU133075 lncRNA upstream 22080 14933898 ~ 14934139 (+) True G115810
TU133061 lncRNA upstream 41830 14912370 ~ 14914389 (+) True G115801
TU133045 lncRNA upstream 61311 14893700 ~ 14894908 (+) True G115785
TU133095 lncRNA downstream 458 14956879 ~ 14957590 (+) True G115826
TU133107 lncRNA downstream 24376 14980797 ~ 14981270 (+) False rnf41l
TU133108 lncRNA downstream 24631 14981052 ~ 14981270 (+) True rnf41l
TU133133 lncRNA downstream 59981 15016402 ~ 15016782 (+) True G115853
TU133145 lncRNA downstream 120302 15076723 ~ 15077344 (+) False G115858
XM_036938585.1 mRNA upstream 63367 14882494 ~ 14892852 (+) False LOC110535729
XM_036938656.1 mRNA downstream 17920 14974341 ~ 14980923 (+) False rnf41l
XM_036938641.1 mRNA downstream 49135 15005556 ~ 15024647 (+) False esrp1
XM_036938647.1 mRNA downstream 49135 15005556 ~ 15024647 (+) False esrp1
XM_036938629.1 mRNA downstream 49135 15005556 ~ 15026595 (+) False esrp1
XM_036938633.1 mRNA downstream 49135 15005556 ~ 15026595 (+) False esrp1
TU133002 other upstream 77544 14877258 ~ 14878675 (+) True tmem67
TU132969 other upstream 90936 14860720 ~ 14865283 (+) False si:ch211-197h24.6
TU132970 other upstream 90936 14861786 ~ 14865283 (+) False si:ch211-197h24.6
TU132971 other upstream 90936 14862873 ~ 14865283 (+) True si:ch211-197h24.6
TU132987 other upstream 185316 14753623 ~ 14770903 (+) False stx17
TU133106 other downstream 49172 15005593 ~ 15007371 (+) True esrp1
TU133135 other downstream 74018 15030439 ~ 15031445 (+) True G115854
TU133148 other downstream 138769 15095190 ~ 15099251 (+) False LOC110508003
TU133149 other downstream 138769 15095190 ~ 15099164 (+) False LOC110508003
TU133565 other downstream 314781 15271202 ~ 15271609 (+) True G116207

Expression Profile