Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00028154 |
| length | 898 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 9 |
| gene id | XLOC_014132 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 30884706 ~ 30895273 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006974 | cellular response to DNA damage stimulus | biological_process |
| GO:0006412 | translation | biological_process |
| GO:0006418 | tRNA aminoacylation for protein translation | biological_process |
| GO:0006437 | tyrosyl-tRNA aminoacylation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0000049 | tRNA binding | molecular_function |
| GO:0004812 | aminoacyl-tRNA ligase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004831 | tyrosine-tRNA ligase activity | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| GO:0016874 | ligase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030425-2 | Predicted to enable tyrosine-tRNA ligase activity. Acts upstream of or within cellular response to DNA damage stimulus. Predicted to be located in nucleus. Is expressed in several structures, including hematopoietic system; immature eye; mesoderm; musculature system; and nervous system. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease dominant intermediate C. Orthologous to human YARS1 (tyrosyl-tRNA synthetase 1). |
| ensembl_id | ENSDART00000135484 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00029724 | lncRNA | upstream | 41755 | 30841639 ~ 30843233 (+) | True | XLOC_014130 |
| TCONS_00029956 | lncRNA | upstream | 48783 | 30832290 ~ 30836205 (+) | True | XLOC_014129 |
| TCONS_00029955 | lncRNA | upstream | 83000 | 30800052 ~ 30801988 (+) | True | XLOC_014128 |
| TCONS_00029723 | lncRNA | upstream | 159285 | 30724996 ~ 30725703 (+) | True | XLOC_014127 |
| TCONS_00028143 | lncRNA | upstream | 295037 | 30587866 ~ 30589951 (+) | True | XLOC_014124 |
| TCONS_00029725 | lncRNA | downstream | 77643 | 30969012 ~ 30970025 (+) | True | XLOC_014133 |
| TCONS_00029957 | lncRNA | downstream | 247458 | 31138827 ~ 31153090 (+) | True | XLOC_014137 |
| TCONS_00029958 | lncRNA | downstream | 266278 | 31157647 ~ 31218099 (+) | False | XLOC_014138 |
| TCONS_00029959 | lncRNA | downstream | 359551 | 31250920 ~ 31348348 (+) | False | XLOC_014139 |
| TCONS_00029960 | lncRNA | downstream | 359572 | 31250941 ~ 31279906 (+) | False | XLOC_014139 |
| TCONS_00028148 | mRNA | upstream | 934 | 30867845 ~ 30884054 (+) | False | XLOC_014131 |
| TCONS_00028147 | mRNA | upstream | 200114 | 30662529 ~ 30684874 (+) | True | XLOC_014126 |
| TCONS_00028146 | mRNA | upstream | 201310 | 30633453 ~ 30683678 (+) | False | XLOC_014126 |
| TCONS_00028141 | mRNA | upstream | 368308 | 30495109 ~ 30516680 (+) | True | XLOC_014122 |
| TCONS_00028140 | mRNA | upstream | 416754 | 30450125 ~ 30468234 (+) | True | XLOC_014121 |
| TCONS_00028159 | mRNA | downstream | 98760 | 30990129 ~ 30997794 (+) | False | XLOC_014134 |
| TCONS_00028158 | mRNA | downstream | 98760 | 30990129 ~ 30997794 (+) | False | XLOC_014134 |
| TCONS_00028160 | mRNA | downstream | 99446 | 30990815 ~ 30994160 (+) | True | XLOC_014134 |
| TCONS_00028161 | mRNA | downstream | 151633 | 31043002 ~ 31053378 (+) | False | XLOC_014135 |
| TCONS_00028162 | mRNA | downstream | 153118 | 31044487 ~ 31054326 (+) | True | XLOC_014135 |
| TCONS_00028149 | other | upstream | 2532 | 30879788 ~ 30882456 (+) | True | XLOC_014131 |
| TCONS_00028145 | other | upstream | 253928 | 30630943 ~ 30631060 (+) | True | XLOC_014125 |
| TCONS_00028142 | other | upstream | 366415 | 30518455 ~ 30518573 (+) | True | XLOC_014123 |
| TCONS_00028136 | other | upstream | 1024654 | 29859036 ~ 29860334 (+) | True | XLOC_014118 |
| TCONS_00028134 | other | upstream | 1024782 | 29854249 ~ 29860206 (+) | False | XLOC_014118 |
| TCONS_00028165 | other | downstream | 450654 | 31342023 ~ 31348348 (+) | True | XLOC_014139 |
| TCONS_00028174 | other | downstream | 696562 | 31587931 ~ 31590491 (+) | True | XLOC_014142 |
| TCONS_00028175 | other | downstream | 700155 | 31591524 ~ 31591540 (+) | True | XLOC_014144 |
| TCONS_00028183 | other | downstream | 1167108 | 32058477 ~ 32058599 (+) | True | XLOC_014151 |
| TCONS_00028194 | other | downstream | 1922951 | 32814320 ~ 32818574 (+) | True | XLOC_014160 |
