RNA id: TCONS_00028158


Basic Information

Item Value
RNA id TCONS_00028158
length 2838
RNA type mRNA
GC content 0.41
exon number 5
gene id XLOC_014134
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 30990129 ~ 30997794 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTcgattaaatatttaaagttatcACATCACCAGTTAACATGTTTGTTGAAACTAGCTGCCTCCCTAACTTAACTAATCTGTAATACATAAATTTAGATCAGACATCTATTTAAAGCAGCTGAGATAATGAGCAGGCATTGGCAGGGAAATTCGGTGCTATGGACTCTACTAAACAAACACAAGCTACTTATATCTCACTGTCTAAAATGACTTTCTTGGAGCTTTAAATTTCCACTTAATTTTAATTCTGCTTGAGATCCAGGCTTTCAGGTCATTTTTGAATGTAGGTCAGTGCCGTTTAGGAAACCACAAAAAGCAACTTTTCCCCATTGGTTATCATAGCATGCCAGTCTTGTGCGACTGACCCGCTTGAATTATGTTGCTGTCTCATGCAGATCCTACACTCGCCACCCGTTTGGACACTGACCTTgataatttgaataatatttgTTATCTGCTGTCCTATTGGCTCCAGTGTTTAGGTTGCCTCTCAAAGGATCTCATGATTGCTGATTAGCTGGAGTTGGTGCCCGCGCTGTACAAGCTCATATTTCTTCCTCCttgtgtttattaataaatataaacagattAAACGTTGCCTGGGCGATCTGTGGCATATGTTTAAACTCGGTCAGAGAGGGGCCAGACTACCTCCGTCCTATTTTGAGCTTCAGTTTGGTTACCAGCTCTTCAGTTTGGGTTCATTCCATGGTTATTGTCCTGGAACCTTGTTTTCTGGGTTGAGCTTGTAGGGCAACACGTAATATGGAGGATCAAGAAATGAACTGTGAGAAAGGAAATGGGGCTCTATCAGAGACGGAGAGAAAGTTTGAACCATTGTTTATTGAAGAAGAAGATGAGGACTATTTTGAAGACTGCATGGAAGAGATCGAGGCTGCTTTAACTCTTCCTGGAGAGTCCCTGCCTTTTTCACAAAAATGCAGAGAAGCTTTGCAATCTAAGTTTAATGGACTTATGCAACAGATGTTGATGCAGTTGGATGATTTTGAGGCAGCCCATCCAACCATATCTACACCACTGGAATtactttcagaaacagacaacaAAATGGACAAGAATGGATTTCCAAATGCATTTCAGTTTGTCGAGATGAGCATTCCAGAGAAAGAGCCATCTGTTTTGGTGGTTGAAGATGATCCTGTATACACTTGTGTTTATGTAAGGCCAGAGTTTTCAGCCACCATGGAGATACAACAGCTTAGAGAAGCATTTGAGAGCTGCATTCAGGAGGTGAGCCAGCTGGAGAACAGAAGGGATGAGTTGGTTCAGGAGCTTTTGGAGCTTGAGGAGCCAATGGCCCAAGAGCTAAAAACTGTGAGAGAAAATCTGGGGGAGGAACAAGCCCTTCTGTCCAAGGTCAGACTGGAGAGACAGAGCCTGCAGGAGGAGACTCAAAAGACTAAAAGACGCCTGTTTAGAGCAGCCCGAGACTGTGCACAGAGACACCTAGAGCTTGAATTACAACAGAAAGCAGTGGAGGAGCTCAACCAGGCTCAGGAGAAGTTGAAGACCTTTGCTGATAAGTTGTCTGAGGAAATCTGCACGATTCATTCAGATCACCAAAGCCACCTGCAAGAACTGCAAAAGCAGCAGAGCATTACTCAGGAGTCCAGCAAGAGGAAGACCCGCTCTTATGTGAGTCAAGGGCGGCGAGCCTCTTGTGACCTACAGCAGTACCTGGAGGGCGGGATCAAAGCTCTGGAATTGTTTTATGAGCCCCGTTTAATGTCCCTGCTGAAGAGACGGGAGGTCGCTGTGGAGGCCCTCGGTAAGGCTAAAGAGCAGTGCCAGGAGCTAAAAGCTCAGTTAGGACCACTGAGAGAAGAGGAGCAGAGGCTGAAACTACAAAAAATTTGTCTGGAGGAGAGAATCGGACTAATGGAGAGACAGAGGATTGAAAATGTGGAACAATATCGGgaGACAATTGACATATTGGAGGAGACACTCAGAGAAATGAAAACTGAGCTCAAGATCCAGATTAAGAAGAGAGAAGAATTGGAAATACTGAAGAACAGCAAGGCCAAGGAGCTGTTACTCTACAGAGAGAGTGTAGAGGAGCCCTGCAAGCAAGACAACAGTGTCGTGGTGGAGAAAACCTAATGAACCAATGTTTGTTtcattgaaatctttttttttatgtaaaatgctTTTGATATAGTTTTCGTAGTTAAAGCTAAACTGCCTGTCTTCTCTATCATTGAAGTCACCAAAACAATAACTACAATATACTGCAAACACACATCAATGCAATCTGCAAAGATGAAATCAGATTCTATCAAGCACTCTAAACACCAGGACCAAGTATGTTAGAGATCCAGATCTTTATCTGACAAGTTACGCAACTAAGATTGTTCTTAAAACAGTTTTTGTCAGTTGTGTTTAAGCGAGAATAAAGCTCTTATATCCAGTGGTGCCAGTgaattaaaatgtttcttttatgaGTAAGTGAAGAGGGCAAAACAAAGACTTAAATGGGCACTGTAAGAAAGCTTTCTAAACATACCGACAGCATGATGGTGAGGACATTTACTACTAAGTGCAAAGAGAAGATTAATgaagtgttttgtttatttaatgtgtcCTGTTAATATGATTTGAGATAAACATGTAAGAATTAGAATTTATGTTTATGTGAATTGTTCTTACTTGCAGATAGAGTTCAATTACACAAACTCTGTCAAAATGACAAGGGGCATGTTTTTGTAAGATTGCATAAGAggttattttaagaaattttgcagtacttttaaatcatttaatctgaattattacaaaaaaataaagggaaTTTTGTTGAGGAATAATGTCTTGAGTT

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-747 Predicted to be located in intermediate filament. Orthologous to human SYNC (syncoilin, intermediate filament protein).

Ensembl:

ensembl_id ENSDART00000052169

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029725 lncRNA upstream 20104 30969012 ~ 30970025 (+) True XLOC_014133
TCONS_00029724 lncRNA upstream 146896 30841639 ~ 30843233 (+) True XLOC_014130
TCONS_00029956 lncRNA upstream 153924 30832290 ~ 30836205 (+) True XLOC_014129
TCONS_00029955 lncRNA upstream 188141 30800052 ~ 30801988 (+) True XLOC_014128
TCONS_00029723 lncRNA upstream 264426 30724996 ~ 30725703 (+) True XLOC_014127
TCONS_00029957 lncRNA downstream 141033 31138827 ~ 31153090 (+) True XLOC_014137
TCONS_00029958 lncRNA downstream 159853 31157647 ~ 31218099 (+) False XLOC_014138
TCONS_00029959 lncRNA downstream 253126 31250920 ~ 31348348 (+) False XLOC_014139
TCONS_00029960 lncRNA downstream 253147 31250941 ~ 31279906 (+) False XLOC_014139
TCONS_00029961 lncRNA downstream 253147 31250941 ~ 31315564 (+) False XLOC_014139
TCONS_00028152 mRNA upstream 94856 30884983 ~ 30895273 (+) False XLOC_014132
TCONS_00028150 mRNA upstream 94857 30884706 ~ 30895272 (+) False XLOC_014132
TCONS_00028154 mRNA upstream 98760 30884988 ~ 30891369 (+) False XLOC_014132
TCONS_00028151 mRNA upstream 98947 30884960 ~ 30891182 (+) False XLOC_014132
TCONS_00028156 mRNA upstream 99099 30885258 ~ 30891030 (+) False XLOC_014132
TCONS_00028161 mRNA downstream 45208 31043002 ~ 31053378 (+) False XLOC_014135
TCONS_00028162 mRNA downstream 46693 31044487 ~ 31054326 (+) True XLOC_014135
TCONS_00028163 mRNA downstream 63924 31061718 ~ 31063020 (+) True XLOC_014136
TCONS_00028164 mRNA downstream 185701 31183495 ~ 31197780 (+) True XLOC_014138
TCONS_00028166 mRNA downstream 406892 31404686 ~ 31431027 (+) True XLOC_014140
TCONS_00028157 other upstream 99119 30885312 ~ 30891010 (+) True XLOC_014132
TCONS_00028153 other upstream 102878 30884984 ~ 30887251 (+) False XLOC_014132
TCONS_00028149 other upstream 107673 30879788 ~ 30882456 (+) True XLOC_014131
TCONS_00028145 other upstream 359069 30630943 ~ 30631060 (+) True XLOC_014125
TCONS_00028142 other upstream 471556 30518455 ~ 30518573 (+) True XLOC_014123
TCONS_00028165 other downstream 344229 31342023 ~ 31348348 (+) True XLOC_014139
TCONS_00028174 other downstream 590137 31587931 ~ 31590491 (+) True XLOC_014142
TCONS_00028175 other downstream 593730 31591524 ~ 31591540 (+) True XLOC_014144
TCONS_00028183 other downstream 1060683 32058477 ~ 32058599 (+) True XLOC_014151
TCONS_00028194 other downstream 1816526 32814320 ~ 32818574 (+) True XLOC_014160

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000054_08021522_08026014.mRNA True 1956 mRNA 0.43 4 CI01000054 8020943 ~ 8026014 (-)