RNA id: TCONS_00028165


Basic Information

Item Value
RNA id TCONS_00028165
length 749
RNA type processed_transcript
GC content 0.43
exon number 2
gene id XLOC_014139
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 31250920 ~ 31348348 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCGCTCAAGGCGTTTAAAGTTTCGGAGACGCTCTTAAAGTGAAGTCCATTGAGTTCAGAACTGAGTCTTTCATTAAACTACAGAGAGGGAATTCAGTGCTCTTGCCATGAGGTCACCGTCCCATCGAGAGGCGTCCCATGCCAGGAACCAGCCGGTGAAGGTGGGGGGCTCATGTCCCTGCTTTACCACAACCAAAGGAGTCCCCTTGTCCCGTCCTGATGGGTCTGTCTCAATGTAGATCTTTGCTGCAAAAGTACAACAATATTCAGAAAGttaaatgatcatatttattAGTTAGCAAAAAGACGACATATTGAAAATgttgatttttgtattttaaatttcatGTTTATCCCTTTAATTTGACTCAAATGAATGTGTGCCTGAGGCTTCTCACCGGATTTCACAGACTCAGTCCTCTCCACCTCATTGGCATCCTTCCCAATCCACACAAAAACCTGAGAGGGAAATCAAGAGTCATCATGGCTACACCCAAGGCAGGAGATACCTTTGAATCTTAAACATAATCCATGAGGAAGTCATAAAGAGAGATAAGCGTCTAACCGAATCCCAGACATCCAGCAGCATGACATCATCTTCAGCCAGATCATCTTGGTTAAACTCACCAGGTACTTCTTCGATCTATAGTTGTAAAAGTCAGTTTTCAATCAGTAGTTCAGTTTGACCGTTTATATCTGATCATTAAGCACAGACAGGTTCTGTTATACATGGTCAGCATTGGCTCC

Function

GO:

id name namespace
GO:0030496 midbody cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000133445

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029961 lncRNA upstream 26459 31250941 ~ 31315564 (+) False XLOC_014139
TCONS_00029960 lncRNA upstream 62117 31250941 ~ 31279906 (+) False XLOC_014139
TCONS_00029958 lncRNA upstream 123924 31157647 ~ 31218099 (+) False XLOC_014138
TCONS_00029957 lncRNA upstream 188933 31138827 ~ 31153090 (+) True XLOC_014137
TCONS_00029725 lncRNA upstream 371998 30969012 ~ 30970025 (+) True XLOC_014133
TCONS_00029962 lncRNA downstream 207697 31556045 ~ 31561224 (+) False XLOC_014142
TCONS_00028173 lncRNA downstream 239398 31587746 ~ 31588650 (+) False XLOC_014142
TCONS_00029963 lncRNA downstream 452157 31800505 ~ 31859540 (+) False XLOC_014146
TCONS_00029726 lncRNA downstream 476491 31824839 ~ 31827192 (+) True XLOC_014146
TCONS_00029964 lncRNA downstream 526671 31875019 ~ 31882377 (+) True XLOC_014147
TCONS_00028164 mRNA upstream 144243 31183495 ~ 31197780 (+) True XLOC_014138
TCONS_00028163 mRNA upstream 279003 31061718 ~ 31063020 (+) True XLOC_014136
TCONS_00028162 mRNA upstream 287697 31044487 ~ 31054326 (+) True XLOC_014135
TCONS_00028161 mRNA upstream 288645 31043002 ~ 31053378 (+) False XLOC_014135
TCONS_00028159 mRNA upstream 344229 30990129 ~ 30997794 (+) False XLOC_014134
TCONS_00028166 mRNA downstream 56338 31404686 ~ 31431027 (+) True XLOC_014140
TCONS_00028167 mRNA downstream 183695 31532043 ~ 31553518 (+) True XLOC_014141
TCONS_00028168 mRNA downstream 193259 31541607 ~ 31592425 (+) False XLOC_014142
TCONS_00028169 mRNA downstream 228501 31576849 ~ 31579383 (+) False XLOC_014143
TCONS_00028170 mRNA downstream 228585 31576933 ~ 31579383 (+) True XLOC_014143
TCONS_00028157 other upstream 451013 30885312 ~ 30891010 (+) True XLOC_014132
TCONS_00028153 other upstream 454772 30884984 ~ 30887251 (+) False XLOC_014132
TCONS_00028149 other upstream 459567 30879788 ~ 30882456 (+) True XLOC_014131
TCONS_00028145 other upstream 710963 30630943 ~ 30631060 (+) True XLOC_014125
TCONS_00028142 other upstream 823450 30518455 ~ 30518573 (+) True XLOC_014123
TCONS_00028174 other downstream 239583 31587931 ~ 31590491 (+) True XLOC_014142
TCONS_00028175 other downstream 243176 31591524 ~ 31591540 (+) True XLOC_014144
TCONS_00028183 other downstream 710129 32058477 ~ 32058599 (+) True XLOC_014151
TCONS_00028194 other downstream 1465972 32814320 ~ 32818574 (+) True XLOC_014160
TCONS_00028217 other downstream 2383814 33732162 ~ 33765725 (+) False XLOC_014168

Expression Profile

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