RNA id: TU136196


Basic Information

Item Value
RNA id TU136196
length 541
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G118276
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16829842 ~ 16834995 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtaggttttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcacctttttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtgctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136184 lncRNA downstream 8154 16821398 ~ 16821688 (-) True G118265
TU136191 lncRNA downstream 8448 16821193 ~ 16821394 (-) True G118272
TU136185 lncRNA downstream 13458 16816172 ~ 16816384 (-) True G118266
TU135306 lncRNA downstream 22785 16806703 ~ 16807057 (-) True G117588
TU135297 lncRNA downstream 46263 16782879 ~ 16783579 (-) True G117579
TU136216 lncRNA upstream 13896 16848891 ~ 16854112 (-) True G118284
TU136219 lncRNA upstream 16084 16851079 ~ 16853300 (-) True G118286
TU136227 lncRNA upstream 36014 16871009 ~ 16871264 (-) True G118294
TU136231 lncRNA upstream 48573 16883568 ~ 16883778 (-) True G118298
TU136240 lncRNA upstream 55394 16890389 ~ 16897923 (-) True G118304
XR_005035274.1 mRNA downstream 284463 16544642 ~ 16545379 (-) True LOC118937862
XR_005035273.1 mRNA downstream 285621 16543484 ~ 16544221 (-) True LOC118937856
XR_005035267.1 mRNA downstream 396397 16430783 ~ 16433445 (-) False LOC118937848
XM_036939652.1 mRNA upstream 624 16835619 ~ 16870366 (-) True LOC110536202
XM_036939691.1 mRNA upstream 238223 17073218 ~ 17081991 (-) False LOC110519673
XM_036939690.1 mRNA upstream 238223 17073218 ~ 17083146 (-) False LOC110519673
XM_036939693.1 mRNA upstream 238223 17073218 ~ 17141568 (-) True LOC110519673
XM_036939694.1 mRNA upstream 259252 17094247 ~ 17121323 (-) False LOC110534246
TU136192 other downstream 1820 16827671 ~ 16828022 (-) True G118273
TU135003 other downstream 624425 16203014 ~ 16205417 (-) True LOC110536122
TU134980 other downstream 634225 16189951 ~ 16195617 (-) False LOC110536103
TU134981 other downstream 634225 16189951 ~ 16195617 (-) True LOC110536103
TU134469 other downstream 721866 16098572 ~ 16107976 (-) True LOC110534219
TU136239 other upstream 98574 16933569 ~ 16934290 (-) True G118303
TU136262 other upstream 160525 16995520 ~ 16998093 (-) False G118319
TU136270 other upstream 162355 16997350 ~ 16998093 (-) True G118319
TU136361 other upstream 216186 17051181 ~ 17055124 (-) False G118392
TU136386 other upstream 259339 17094334 ~ 17095116 (-) True LOC110534246

Expression Profile