RNA id: TU135331


Basic Information

Item Value
RNA id TU135331
length 358
lncRNA type intronic
GC content 0.46
exon number 2
gene id G117610
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16848256 ~ 16850358 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgagagatgttgatagagagagagagaggtaggagaaggacagagagtgagagatgttgataaagagagagagagaggtaggagaaggacagagagtgagagatgttgatagagagagagagagaggtaggagaaggacagagagtgagagatgttgataaagagagagagagaggtaggagaaggacagagagtgagagatgttgataaagagagagagaggtaggagaaggacagagagggagagatgttgataaagagagagagaggtaggagaaggacagagagtgagagatgttgataaagagagagagagagaggtaggagaaggacagagagtgagagatgtcgataaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135323 lncRNA upstream 18845 16829057 ~ 16829411 (+) True G117602
TU135318 lncRNA upstream 27973 16820044 ~ 16820283 (+) True G117597
TU135316 lncRNA upstream 30604 16817356 ~ 16817652 (+) True G117595
TU135315 lncRNA upstream 31001 16816998 ~ 16817255 (+) True G117594
TU135312 lncRNA upstream 38884 16809161 ~ 16809372 (+) True G117591
TU135320 lncRNA downstream 21260 16871618 ~ 16875855 (+) True LOC110536210
TU135363 lncRNA downstream 36669 16887027 ~ 16893997 (+) True G117632
TU135368 lncRNA downstream 50921 16901279 ~ 16901489 (+) True G117636
TU135370 lncRNA downstream 52544 16902902 ~ 16903245 (+) True G117638
TU135441 lncRNA downstream 176520 17026878 ~ 17055189 (+) False LOC110536287
XM_036939646.1 mRNA upstream 81033 16759736 ~ 16767223 (+) False LOC110520867
XM_036961677.1 mRNA upstream 100970 16733333 ~ 16747286 (+) True LOC118936591
XM_036939628.1 mRNA upstream 180828 16516081 ~ 16667428 (+) True LOC110512627
XM_021621796.2 mRNA upstream 549707 16290145 ~ 16298549 (+) True LOC110536177
XM_021621651.2 mRNA upstream 675218 16133770 ~ 16173038 (+) True chrnb2
XM_036939656.1 mRNA downstream 21184 16871542 ~ 16875899 (+) False LOC110536210
XM_036939657.1 mRNA downstream 21184 16871542 ~ 16875899 (+) False LOC110536210
XM_021621876.2 mRNA downstream 25636 16875994 ~ 16879352 (+) True LOC110536226
XM_036939665.1 mRNA downstream 39220 16889578 ~ 16891184 (+) True LOC110536234
XM_021618966.2 mRNA downstream 45942 16896300 ~ 16897824 (+) True LOC110534232
TU134636 other upstream 662472 16183686 ~ 16185784 (+) True G117048
TU133662 other upstream 1396568 15450468 ~ 15451688 (+) True LOC110535842
TU133604 other upstream 1481467 15355858 ~ 15366789 (+) True LOC110535783
TU133587 other upstream 1510554 15337430 ~ 15337702 (+) True G116224
TU133558 other upstream 1511898 15329582 ~ 15336358 (+) True LOC110535811
TU135335 other downstream 145352 16995710 ~ 16998361 (+) True LOC110536275
TU135454 other downstream 199774 17050132 ~ 17050839 (+) True G117704
TU135467 other downstream 222843 17073201 ~ 17073701 (+) True G117714
TU135631 other downstream 549655 17400013 ~ 17409287 (+) False LOC110520798
TU135611 other downstream 560274 17410632 ~ 17421660 (+) False LOC110520798

Expression Profile