RNA id: TU136240



Basic Information


Item Value
RNA id TU136240
length 691
lncRNA type read_through
GC content 0.46
exon number 3
gene id G118304
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16890389 ~ 16897923 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTCAATACTGAACTAGGAAGAAGTGACTGGCACTGTCTATTCTGTTTTACACTTACAGGCCAAATACAAGACACACATCAGACAAATGTGACaaacagagagagtgggaaagcCACTGTTTATTCACAACAGTAAGACTTTTATAAAATGACTTATTTGACATATAGAAAAGCAAAATGACATATAGAAAACATCCATCTCTGCTTCTCTTTCTCCTTGTCCTGTCCTCCCTCACTTCTTGGCAGAAGCCTTCTGGGTGTGGAGCTGGTAGAGCTGTTCACAGGCAATGGAGAGGCCCACCACCAGAGAGACAAACTCCTCAAAGTTCACCTTCCCATCACCATTCTGGTCCAGATCCTTCATGATCGTGTCTATGGCGGCTGGGTCCTTCTGGgaCTTCAGGAAGCTGGCCAGTTCTGTCTTCATCAGCTCTTTGAGCTCCTTCTTGCTCAGTGTGTTGCCATCACCATCCTTTTCAGAATAGAGATGGAACACCATGATCAGGGACTCCATGGAACGCTCCAGCTCAGATGGCATGGCTGCAGATATTGACAcactgaggaggggagagagacgtCATTTAGGGTGGGTGTACTACTGTAGTCCCTGTATCTAAATACACTTACACACTGGAGATCCTGCAACAGCCAGGCTGCTGGTTCAAACCCAACTCAGGCCAGTTCCATTAAAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU136231 lncRNA downstream 6611 16883568 ~ 16883778 (-) True G118298
TU136227 lncRNA downstream 19125 16871009 ~ 16871264 (-) True G118294
TU136216 lncRNA downstream 36277 16848891 ~ 16854112 (-) True G118284
TU136219 lncRNA downstream 37089 16851079 ~ 16853300 (-) True G118286
TU136196 lncRNA downstream 55394 16829842 ~ 16834995 (-) True G118276
TU136246 lncRNA upstream 3254 16901177 ~ 16901526 (-) True G118308
TU136248 lncRNA upstream 5896 16903819 ~ 16904168 (-) True G118310
TU136250 lncRNA upstream 7554 16905477 ~ 16905685 (-) True G118312
TU136263 lncRNA upstream 18698 16916621 ~ 16998093 (-) False G118319
TU136267 lncRNA upstream 18698 16916621 ~ 16998093 (-) False G118319
XM_036939652.1 mRNA downstream 20023 16835619 ~ 16870366 (-) True LOC110536202
XR_005035274.1 mRNA downstream 345010 16544642 ~ 16545379 (-) True LOC118937862
XR_005035273.1 mRNA downstream 346168 16543484 ~ 16544221 (-) True LOC118937856
XR_005035266.1 mRNA downstream 456944 16430784 ~ 16433445 (-) False LOC118937848
XM_036939691.1 mRNA upstream 175295 17073218 ~ 17081991 (-) False LOC110519673
XM_036939690.1 mRNA upstream 175295 17073218 ~ 17083146 (-) False LOC110519673
XM_036939693.1 mRNA upstream 175295 17073218 ~ 17141568 (-) True LOC110519673
XM_036939694.1 mRNA upstream 196324 17094247 ~ 17121323 (-) False LOC110534246
XM_021598326.2 mRNA upstream 480089 17378012 ~ 17382684 (-) False LOC110520880
TU136192 other downstream 62367 16827671 ~ 16828022 (-) True G118273
TU135003 other downstream 684972 16203014 ~ 16205417 (-) True LOC110536122
TU134980 other downstream 694772 16189951 ~ 16195617 (-) False LOC110536103
TU134981 other downstream 694772 16189951 ~ 16195617 (-) True LOC110536103
TU134469 other downstream 782413 16098572 ~ 16107976 (-) True LOC110534219
TU136239 other upstream 35646 16933569 ~ 16934290 (-) True G118303
TU136262 other upstream 97597 16995520 ~ 16998093 (-) False G118319
TU136270 other upstream 99427 16997350 ~ 16998093 (-) True G118319
TU136361 other upstream 153258 17051181 ~ 17055124 (-) False G118392
TU136386 other upstream 196411 17094334 ~ 17095116 (-) True LOC110534246

Expression Profile