RNA id: TU136267


Basic Information

Item Value
RNA id TU136267
length 2762
lncRNA type read_through
GC content 0.38
exon number 4
gene id G118319
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16916621 ~ 16998362 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtacatgtctgtgtCCTTCACCTGTCTATGTGTGGTGTGTATAATCAACCCAACCCtatttttgtgtatgtgtgtaaaccTGCATCTCTGACCCTCTGAACCTGCATTGAGGATCTTGCTAATTTTATCATGAATTCACTCATGGAGCAAGAGCTGCTGTTCTGTGGAGAGTGGGCAGGGGGAGCTGTTTCACTTCTTGGTGAAGAACTCGTTGCACACCATGGTGAGGCAGGCCACCAGTGTGACGTACTCCTGGAAGTCCACACTGCCATCTGCGTTAGCGTCCAGATCTTTGAAGATCTTGTCAACCTTTGCCTGGTCAGTGTTTTTCCTTGGTGAAGAACTCATTGCACATCATGGTCAGGCAGGCCACCAGTGTGACGTACTCCTGGAAGTCCACACTGCCATCTGCGTTAGCGTCCAGATCTTTGAAGATCTTGTCAACCTTTGCCTGGTCAGTGTTTTTCCCCCATGATCTCTCCAAGCTCAGCGTTGAGCAGATCTTTGAGTTCTCCCTTGCTCAGGGTCGTCTTGTCGCCCTCCTTGCCAGAGTACTTGTGGAAGGCTGAGATGAGCAATGCCATACTCTGCTGGACCTGTGACATGGTgactacgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagatcaatgtTTTATTATGATAACAGGATGCTGGTGGACATGATGTCCACGCACAGAGAGAGGAATGTTTGCTTACTCTGTATTCACAGTATAATACATCTGATATTATCGACATCATTTGACTTTTTGAAATTTGAAATCACAGAAACTAAGTTAAAGGGATAAATGTCTCATTGTTGACTGAAAAATCCAATTCAAATCTATGTTATCTTACATCCGGGTTCCCATTTCATAAATGTCTGGGAAATAAAGTCATGTTGGCACTGGTTTAATCATGTTTAAACATAAGGTTCAGGTTGAATAGAGGGTTTAAAGAATATTAACGGTTGTTGCACACGAAGCAAAGActtaactacacacacaccacgcccCACTTCTGCTAACAGGTTCTACATCTCTACCacaaaggaagagaaagagagggggagaagagatggagagcaaCGCAACAGAGGCAattaaagagggagagaggtaagagatggagacatagggagagaggcggcgagagaaggaagagagaagcGGATATGGaggggagaaaggaagaggagagggggctgagttgtttaaacacaaacagacatGGCTCTAGCCAACGCCCTTGCAtgtctctctcattaactctggGGGATtttaaggagagaaagagagaagtatatatatatatagagagagaaagatagcgcgagagggacagacagacaaaaataCAGATTGTAGGAAATTGGTGGATCGGCTGAAAGGCGCGTTGGTAATTTCAGGCAAACGATAACATAGAAATCCCAGCACCTCCCCCACCCCTCACCTGTCTCCACCCTCTATCTATATAGTTTGCTTAAGGTgtgtctcttcactctgtccctTCACACATCTCGCCACTATGTAGGGAggttgctctctctcttctctctttctctacctgctCGTAGTCAAGGTGGTGTGAAGCTTCTGAGTTTAAGGAAGCTTCTGTAATGTGAATCCCTCATTTAGCTGACCCTCCTCTCAAGTGTGACTTGCAGTAAGTGCGGTCAAATAAGGACGTTGAAGCAACCATACAGTACGAACATGGTAAGCACAACATTATAGTTGTAAGGAACAATCCCAATCACTGTGGTGGACTCCACTGATCTCTCTCTGAGTCACTGTCAGCTGCCCCAGGACATTCAACCAGACACACGTTCTTATCCCCCCTCTGACTGCCCATCTGATAACTAGAAACACACTCTACTCACAGAATGGTcagagcgaggggagagagagtttatggtaaggacagagagagcgaaagagagagaggggggtgtggaGGATAGAAAGAGGTAGTGTTCTGCACTATGGAAGgattgagggaggaagagagagaggggaggaggaggaagagaagagagattcTTTCATCTAAACTGCGTAGTGCTCTGAGTAGCACCCACACATGTTTGAATGGAAAGGCAGACAAAGTTACGCCCTCCGCAGAGCTTGGCTCAAGATCATAAACAGTGTGGACAGGCACTTACCAACTGTTGCAAAGCACACCCTGAAGTCATTCATACTTTTGCAGTCAAGTATTAATCACTATAAAACATTAAACTACACACAATTACAAATAAATGTTGTAAACCACCCAATGAGAAAGTATAATTTGGCACATCTAACACCTCATAGATAAACACAGCTAAAACAAACTGAAGGTTTTATCAGAGAGGCACTCAGGTACATGTTTTACTAGGTTTAGTTTTCACTCACCGAAGTTGTGCGAGGAGTTGGacagtcagagaaagagagagagagggagagagagagagagagagagagagagagagatctatggTACCTTCAGGAAGCTGCCCAGTTCTGTCTGCATGAGTTCTTTCAGCTCCTTCTTGCTCAGTGTGTTACAGTCACCGTCCTTGTCGGCATAGCGATGGAACACCGTGATCAGGGACTGCAAGGATCTCTCCAATTGAGACGGCATGGCTGCAGAGAGAAGGATAcactgaggaggggagagagggagcggggagatggtaggggagagaaggaggagggagatgggaggggagacaAGGCGGAAGGGGGTGTAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136250 lncRNA downstream 10936 16905477 ~ 16905685 (-) True G118312
TU136248 lncRNA downstream 12453 16903819 ~ 16904168 (-) True G118310
TU136246 lncRNA downstream 15095 16901177 ~ 16901526 (-) True G118308
TU136240 lncRNA downstream 18698 16890389 ~ 16897923 (-) True G118304
TU136231 lncRNA downstream 32843 16883568 ~ 16883778 (-) True G118298
TU136317 lncRNA upstream 6686 17004779 ~ 17005003 (-) True G118360
TU136321 lncRNA upstream 8151 17006244 ~ 17012736 (-) True G118363
TU136328 lncRNA upstream 14997 17013090 ~ 17013337 (-) True G118370
TU136329 lncRNA upstream 15361 17013454 ~ 17013864 (-) True G118371
TU136354 lncRNA upstream 53088 17051181 ~ 17055124 (-) False G118392
XM_036939652.1 mRNA downstream 46255 16835619 ~ 16870366 (-) True LOC110536202
XR_005035274.1 mRNA downstream 371242 16544642 ~ 16545379 (-) True LOC118937862
XR_005035273.1 mRNA downstream 372400 16543484 ~ 16544221 (-) True LOC118937856
XR_005035266.1 mRNA downstream 483176 16430784 ~ 16433445 (-) False LOC118937848
XM_036939691.1 mRNA upstream 75125 17073218 ~ 17081991 (-) False LOC110519673
XM_036939690.1 mRNA upstream 75125 17073218 ~ 17083146 (-) False LOC110519673
XM_036939693.1 mRNA upstream 75125 17073218 ~ 17141568 (-) True LOC110519673
XM_036939694.1 mRNA upstream 96154 17094247 ~ 17121323 (-) False LOC110534246
XM_021598326.2 mRNA upstream 379919 17378012 ~ 17382684 (-) False LOC110520880
TU136192 other downstream 88599 16827671 ~ 16828022 (-) True G118273
TU135003 other downstream 711204 16203014 ~ 16205417 (-) True LOC110536122
TU134980 other downstream 721004 16189951 ~ 16195617 (-) False LOC110536103
TU134981 other downstream 721004 16189951 ~ 16195617 (-) True LOC110536103
TU134469 other downstream 808645 16098572 ~ 16107976 (-) True LOC110534219
TU136361 other upstream 53088 17051181 ~ 17055124 (-) False G118392
TU136386 other upstream 96241 17094334 ~ 17095116 (-) True LOC110534246
TU136451 other upstream 246031 17244124 ~ 17252276 (-) False G118456
TU136453 other upstream 246031 17244124 ~ 17252276 (-) False G118456
TU136456 other upstream 246031 17244124 ~ 17252276 (-) True G118456

Expression Profile