RNA id: TU136456


Basic Information

Item Value
RNA id TU136456
length 1485
RNA type TUCP
GC content 0.43
exon number 2
gene id G118456
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17244124 ~ 17252276 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggggtccggtgcggttgcggtggtcagcagaggcggacggagctttcaacaagttgaaggcgctgttcacggatgcacccgtgttggcccatccggacccctctctagcattcatagtggaggtggatgcgtccgaggctggggtgggtgccgtgctatcacagcgctcgggtacgccaccaaaactccgcccctgcgctttcttctcgaggaagctcagcccagcggagcgtaactatgatgtgggtgaccgggagttgttagcggtggtcagggctctgaaggtgtggagacactggcttgagggggctaagcacccctttctcatctggaccgaccaccaaaatctggagtatattcgggcagctaggagactgaacccgcgtcaggcaaggtgggccatattTTTTACCCGATTCCGGTTCACTTTATcgtatagaccgggctcccagaacgtgaaagcggatgcactgtcccgcctttacgacacagaggataggtccaccgaacctactcccatccttcccgcctcaaAGCTGatagcaccggtggtatgggaggtggactcggacatcgagcgggcgttacgggctgaacccgcgcctcctcagtgtccggcggggcagaagtacgtgccgcttggtgttcgggaccaactgattcggtgggctcacgtcctaccctcctcgggtcaccctggggtgaggAGGACAATAGGAAGCCTtcgggggaggtattggtggcctaccttggctagggacgttaaggtttatgtctcctcctgttcagtatgcgcccagagtaaggctcctaggcaccttcctagagggaagttacaacccctccccgttccacaacggccatggtcacatctatccgtagacttcctgaccgatcttcccccgtctcaggggaacaccacggttctggtgattgtggatcggttctctaagtcctgccgtctcctcccgttgcccggtatccctacagccctacagactgcggaggcattattcacccacgtcttccggcactacggggtgccggaggacatcgtttctgatcggggcccccagttcacgtcccgagtatggagggcgttcatggagcgtctgggggtctcggtcagcctgacctccggttatcaccccgaaagtaatgggcaggtggagagagtaaaccaggaggtgggtaggtttctgcggtcgtactgccaggaccggccaggggagtgggcgaggtacatcccctgggccgaaatggcccagaactcactacgccactcctctactaatgtgtccccttttcagtgtgtgttggggtaccagccggtcctggcaccgtggcatccgagccagaccgaggctcctgcggtggaggaatgggtgcagcgctccaaagagacctggagggccgtccgggAATCCCTTCAACAAGCTAGTGGACGGCAGaaaaggagtgctgaccgccaccgcagtgaggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136445 lncRNA downstream 7377 17231541 ~ 17236747 (-) True G118454
TU136380 lncRNA downstream 82737 17151988 ~ 17161387 (-) False G118398
TU136468 lncRNA upstream 12380 17264656 ~ 17289912 (-) True G118461
TU136472 lncRNA upstream 68638 17320914 ~ 17322386 (-) True G118462
TU136504 lncRNA upstream 70531 17322807 ~ 17323020 (-) True G118490
TU136507 lncRNA upstream 74584 17326860 ~ 17327225 (-) True G118493
TU136509 lncRNA upstream 79943 17332219 ~ 17332480 (-) True G118495
XM_036939693.1 mRNA downstream 102556 17073218 ~ 17141568 (-) True LOC110519673
XM_036939694.1 mRNA downstream 122801 17094247 ~ 17121323 (-) False LOC110534246
XM_036939690.1 mRNA downstream 160978 17073218 ~ 17083146 (-) False LOC110519673
XM_036939691.1 mRNA downstream 162133 17073218 ~ 17081991 (-) False LOC110519673
XM_036939652.1 mRNA downstream 373758 16835619 ~ 16870366 (-) True LOC110536202
XM_021598326.2 mRNA upstream 125736 17378012 ~ 17382684 (-) False LOC110520880
XR_005039483.1 mRNA upstream 128543 17380819 ~ 17380955 (-) True LOC118944171
XR_005039482.1 mRNA upstream 128977 17381253 ~ 17381388 (-) True LOC118944170
XM_036939733.1 mRNA upstream 203451 17455727 ~ 17478371 (-) False LOC110520799
XM_036939736.1 mRNA upstream 203451 17455727 ~ 17483479 (-) False LOC110520799
TU136386 other downstream 149008 17094334 ~ 17095116 (-) True LOC110534246
TU136361 other downstream 189000 17051181 ~ 17055124 (-) False G118392
TU136262 other downstream 246031 16995520 ~ 16998093 (-) False G118319
TU136270 other downstream 246031 16997350 ~ 16998093 (-) True G118319
TU136239 other downstream 309834 16933569 ~ 16934290 (-) True G118303
TU136508 other upstream 78839 17331115 ~ 17332028 (-) True G118494
TU136544 other upstream 221258 17473534 ~ 17484251 (-) True LOC110520799
TU136678 other upstream 413054 17665330 ~ 17666566 (-) True LOC110536309
TU136666 other upstream 429746 17682022 ~ 17710023 (-) True G118606
TU136791 other upstream 657217 17909493 ~ 17919751 (-) True LOC118938160