RNA id: TU136508


Basic Information

Item Value
RNA id TU136508
length 914
RNA type TUCP
GC content 0.46
exon number 1
gene id G118494
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17331115 ~ 17332028 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgaaaaacatccccacagcatgatgttgccaccaccatgcttcaccatagggatggtgccaggtttcctccagacgtgacacttggcattcaggccaaacagttcaatcttggtttcatcagaccaaagaatcttgtttctcatggtctgagagtctttaggtgccttttggcaaattccaagtgggctgtcatgttccttttactgaagagtggcttccatctggctgcTCCACCATTAAtgcctgattggcggagtgctgcagagattgttgtccttctggaaggttctcccatctccacagaggaacaatTGCTGtgtggccgggcggccagctttaggaagtcttggtggctccaaacttcttccatttaagaatgatggaggccactgtattcttggggataTTCAATGCtatatacattttttggtacccttccccagatctgtgcctcgacacaatcctgtcttggagctctacggacaattcctttgacctcatggcttggtttttgctctgacatgcactgtcaactgtgagaccttatatagacaggtgtgtgcctttccaaatgtgtGCATGTCCAATtaattcaatttaccacaggtggactccaatcaagttgtcgaaacatctcaaggaggatcaatggaaacagggtgtgtgtcacgccctggtctttatattttgtgttttctttattattttggtcaggccagggtgtgacatgggtttatttatgtggtgtgttttgtcttggggttttcgtaggtattgggattgtggtttaggggggttctctagcaaagtctatggctgtctgaattggttctcaatcagaggcaggtgattttcgttgtctctgattgggaaccatatttagtcagccgtattctttgagtgtttggtggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136507 lncRNA downstream 3890 17326860 ~ 17327225 (-) True G118493
TU136504 lncRNA downstream 8095 17322807 ~ 17323020 (-) True G118490
TU136472 lncRNA downstream 8729 17320914 ~ 17322386 (-) True G118462
TU136468 lncRNA downstream 41203 17264656 ~ 17289912 (-) True G118461
TU136446 lncRNA downstream 80466 17243514 ~ 17250649 (-) False G118455
TU136509 lncRNA upstream 191 17332219 ~ 17332480 (-) True G118495
TU136511 lncRNA upstream 6017 17338045 ~ 17338620 (-) True G118497
TU136512 lncRNA upstream 7130 17339158 ~ 17340283 (-) True G118498
TU136519 lncRNA upstream 36796 17368824 ~ 17369044 (-) True G118505
TU136524 lncRNA upstream 41254 17373282 ~ 17373585 (-) True G118509
XM_036939693.1 mRNA downstream 189547 17073218 ~ 17141568 (-) True LOC110519673
XM_036939694.1 mRNA downstream 209792 17094247 ~ 17121323 (-) False LOC110534246
XM_036939690.1 mRNA downstream 247969 17073218 ~ 17083146 (-) False LOC110519673
XM_036939691.1 mRNA downstream 249124 17073218 ~ 17081991 (-) False LOC110519673
XM_036939652.1 mRNA downstream 460749 16835619 ~ 16870366 (-) True LOC110536202
XM_021598326.2 mRNA upstream 45984 17378012 ~ 17382684 (-) False LOC110520880
XR_005039483.1 mRNA upstream 48791 17380819 ~ 17380955 (-) True LOC118944171
XR_005039482.1 mRNA upstream 49225 17381253 ~ 17381388 (-) True LOC118944170
XM_036939733.1 mRNA upstream 123699 17455727 ~ 17478371 (-) False LOC110520799
XM_036939736.1 mRNA upstream 123699 17455727 ~ 17483479 (-) False LOC110520799
TU136451 other downstream 78839 17244124 ~ 17252276 (-) False G118456
TU136453 other downstream 78839 17244124 ~ 17252276 (-) False G118456
TU136456 other downstream 78839 17244124 ~ 17252276 (-) True G118456
TU136386 other downstream 235999 17094334 ~ 17095116 (-) True LOC110534246
TU136361 other downstream 275991 17051181 ~ 17055124 (-) False G118392
TU136544 other upstream 141506 17473534 ~ 17484251 (-) True LOC110520799
TU136678 other upstream 333302 17665330 ~ 17666566 (-) True LOC110536309
TU136666 other upstream 349994 17682022 ~ 17710023 (-) True G118606
TU136791 other upstream 577465 17909493 ~ 17919751 (-) True LOC118938160
TU136786 other upstream 667445 17999473 ~ 18003296 (-) False LOC110536375

Expression Profile