RNA id: TU135755


Basic Information

Item Value
RNA id TU135755
length 459
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G117926
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17683687 ~ 17686455 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGACATAAAGGCACATGGACAAAACATGCTTATAGCAGGTTGAGCAACAACAAGGTAAGTGAAAAATAACAGAATAAGGTAAAAGCACCATAGTCTGGCTGTAAGGCACATGAGTACAGTAAGAAGAGCCATACTAGAAGCAGCATCACACTTTCTCCCCTTACTTCTCTTCTTCCTTCTCCCCTTTCTTCTATTCTTCCTTATCTTCTTCCTTCTCCacctttcttctcttcttccttctattcttccttctcttcttccttctcttcttccttcTCCCCTTTCTTCTattcttccttctcttcttccttctccccttccttctcttcttccttcTCCCCTTTCTTCTATTCTTCCTTCtacccttccttctcttcttccatCTCCCCTTCCTTCAATTCTTCCTTctccccttccttctcttcttcccttCATTCTCATcattctgtcctctcttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135784 lncRNA upstream 22632 17660784 ~ 17661055 (+) True G117943
TU135710 lncRNA upstream 140050 17536520 ~ 17543637 (+) True G117883
TU135684 lncRNA upstream 182483 17500646 ~ 17501204 (+) True G117865
TU135683 lncRNA upstream 183457 17499938 ~ 17500230 (+) True G117864
TU135644 lncRNA upstream 240075 17442891 ~ 17443612 (+) False G117842
TU135804 lncRNA downstream 38483 17722761 ~ 17723043 (+) True G117959
TU135805 lncRNA downstream 38966 17723244 ~ 17723459 (+) True G117960
TU135806 lncRNA downstream 40123 17724401 ~ 17724628 (+) True G117961
TU135808 lncRNA downstream 43386 17727664 ~ 17728395 (+) True G117963
TU135809 lncRNA downstream 46753 17731031 ~ 17731264 (+) True G117964
XM_036939811.1 mRNA upstream 151450 17523084 ~ 17532237 (+) False polr3c
XM_036939797.1 mRNA upstream 151450 17523085 ~ 17532237 (+) False polr3c
XM_036939802.1 mRNA upstream 151450 17523085 ~ 17532237 (+) True polr3c
XM_036939779.1 mRNA upstream 168660 17506575 ~ 17515027 (+) False gba
XM_036940059.1 mRNA downstream 332517 18016795 ~ 18047915 (+) False LOC110536418
XM_036940051.1 mRNA downstream 332519 18016797 ~ 18047915 (+) False LOC110536418
XM_036940041.1 mRNA downstream 332521 18016799 ~ 18047915 (+) False LOC110536418
XM_036940069.1 mRNA downstream 368227 18052505 ~ 18071232 (+) False LOC110536431
XM_036940078.1 mRNA downstream 368227 18052505 ~ 18071232 (+) False LOC110536431
TU135495 other upstream 225665 17455765 ~ 17458022 (+) True G117735
TU135611 other upstream 262027 17410632 ~ 17421660 (+) False LOC110520798
TU135623 other upstream 262027 17410632 ~ 17421660 (+) False LOC110520798
TU135631 other upstream 274400 17400013 ~ 17409287 (+) False LOC110520798
TU135467 other upstream 609986 17073201 ~ 17073701 (+) True G117714
TU137226 other downstream 773080 18457358 ~ 18476354 (+) False LOC110536658
TU137225 other downstream 792146 18476424 ~ 18477134 (+) False LOC110536658
TU137398 other downstream 949561 18633839 ~ 18636041 (+) True G119153
TU137405 other downstream 986235 18670513 ~ 18672320 (+) True G119160
TU137542 other downstream 1274858 18959136 ~ 18961465 (+) False G119245

Expression Profile