RNA id: TU136819


Basic Information

Item Value
RNA id TU136819
length 459
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G118722
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17864354 ~ 17876646 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgcagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcaggaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagttcaattttggtttcatctgaccagagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136777 lncRNA downstream 57900 17803916 ~ 17806454 (-) True G118688
TU136778 lncRNA downstream 58822 17804629 ~ 17805532 (-) True G118689
TU136772 lncRNA downstream 76720 17785914 ~ 17787634 (-) True G118683
TU136768 lncRNA downstream 85777 17776126 ~ 17778577 (-) True G118679
TU136753 lncRNA downstream 119910 17743969 ~ 17744444 (-) True G118664
TU136843 lncRNA upstream 25965 17902611 ~ 17903908 (-) True G118741
TU136848 lncRNA upstream 45428 17922074 ~ 17922290 (-) True G118746
TU136849 lncRNA upstream 48488 17925134 ~ 17925378 (-) True G118747
TU136853 lncRNA upstream 53667 17930313 ~ 17930529 (-) True G118751
TU136793 lncRNA upstream 102596 17979242 ~ 17982144 (-) True G118699
XM_036939888.1 mRNA downstream 55823 17733938 ~ 17808531 (-) False LOC110519442
XM_036939896.1 mRNA downstream 55823 17733938 ~ 17808531 (-) False LOC110519442
XM_036939905.1 mRNA downstream 55823 17733938 ~ 17808531 (-) False LOC110519442
XM_036939912.1 mRNA downstream 55823 17733938 ~ 17808531 (-) False LOC110519442
XM_036939920.1 mRNA downstream 55823 17733938 ~ 17808531 (-) False LOC110519442
XM_021622078.2 mRNA upstream 54586 17931232 ~ 17947821 (-) True tars2
XM_021622108.2 mRNA upstream 75735 17952381 ~ 17966177 (-) False LOC110536358
XR_005035418.1 mRNA upstream 75735 17952381 ~ 17966177 (-) False LOC110536358
XM_036939971.1 mRNA upstream 75735 17952381 ~ 17966181 (-) True LOC110536358
XM_036939998.1 mRNA upstream 89755 17966401 ~ 17976510 (-) False LOC110536367
TU136666 other downstream 154331 17682022 ~ 17710023 (-) True G118606
TU136678 other downstream 197788 17665330 ~ 17666566 (-) True LOC110536309
TU136544 other downstream 380103 17473534 ~ 17484251 (-) True LOC110520799
TU136508 other downstream 532326 17331115 ~ 17332028 (-) True G118494
TU136456 other downstream 612078 17244124 ~ 17252276 (-) True G118456
TU136791 other upstream 32847 17909493 ~ 17919751 (-) True LOC118938160
TU136786 other upstream 122827 17999473 ~ 18003296 (-) False LOC110536375
TU136787 other upstream 122827 17999473 ~ 18003296 (-) True LOC110536375
TU136915 other upstream 255828 18132474 ~ 18152786 (-) True LOC110536462
TU136972 other upstream 285663 18162309 ~ 18165113 (-) True LOC110534274

Expression Profile