RNA id: TU136821


Basic Information

Item Value
RNA id TU136821
length 380
lncRNA type intronic
GC content 0.52
exon number 2
gene id G118723
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17868555 ~ 17899971 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cggaaccatccagggtggtgatgctagtcgggcgtgcgggtgcaggcagtgaacggttgaaaagcatgcatttggttttactagcgtttaagagcagttggaggccacggaaggagtgttgtattgtattgaagctcgtttggaggttagatagtgtccaaggacgggccggaagtatacagaatggtgtcgtctgcgtagaggtggatcagggaatcgcccgcagcaagagcaacatcattgatatatacagagaaaagagtcggcccgagaattgaaccctgtggcacccccatagagactgccaaaggaccggacagcatgccctccgatttgacacactgaactctgtctgcaaagtagttggtgaaccaggcaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136777 lncRNA downstream 62101 17803916 ~ 17806454 (-) True G118688
TU136778 lncRNA downstream 63023 17804629 ~ 17805532 (-) True G118689
TU136772 lncRNA downstream 80921 17785914 ~ 17787634 (-) True G118683
TU136768 lncRNA downstream 89978 17776126 ~ 17778577 (-) True G118679
TU136753 lncRNA downstream 124111 17743969 ~ 17744444 (-) True G118664
TU136843 lncRNA upstream 2640 17902611 ~ 17903908 (-) True G118741
TU136848 lncRNA upstream 22103 17922074 ~ 17922290 (-) True G118746
TU136849 lncRNA upstream 25163 17925134 ~ 17925378 (-) True G118747
TU136853 lncRNA upstream 30342 17930313 ~ 17930529 (-) True G118751
TU136793 lncRNA upstream 79271 17979242 ~ 17982144 (-) True G118699
XM_036939888.1 mRNA downstream 60024 17733938 ~ 17808531 (-) False LOC110519442
XM_021622078.2 mRNA upstream 31261 17931232 ~ 17947821 (-) True tars2
XM_021622108.2 mRNA upstream 52410 17952381 ~ 17966177 (-) False LOC110536358
XR_005035418.1 mRNA upstream 52410 17952381 ~ 17966177 (-) False LOC110536358
XM_036939971.1 mRNA upstream 52410 17952381 ~ 17966181 (-) True LOC110536358
XM_036939998.1 mRNA upstream 66430 17966401 ~ 17976510 (-) False LOC110536367
TU136666 other downstream 158532 17682022 ~ 17710023 (-) True G118606
TU136678 other downstream 201989 17665330 ~ 17666566 (-) True LOC110536309
TU136544 other downstream 384304 17473534 ~ 17484251 (-) True LOC110520799
TU136508 other downstream 536527 17331115 ~ 17332028 (-) True G118494
TU136456 other downstream 616279 17244124 ~ 17252276 (-) True G118456
TU136791 other upstream 9522 17909493 ~ 17919751 (-) True LOC118938160
TU136786 other upstream 99502 17999473 ~ 18003296 (-) False LOC110536375
TU136787 other upstream 99502 17999473 ~ 18003296 (-) True LOC110536375
TU136915 other upstream 232503 18132474 ~ 18152786 (-) True LOC110536462
TU136972 other upstream 262338 18162309 ~ 18165113 (-) True LOC110534274

Expression Profile