RNA id: TU136843


Basic Information

Item Value
RNA id TU136843
length 263
lncRNA type intronic
GC content 0.43
exon number 2
gene id G118741
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17902611 ~ 17903908 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatgagtgtagagttagtaacacctgtattaactaggaggtggttcctgtatgagtgtagagttagtaacaccagtattaactaggaggtggttcctgtatgagtgtagagttagtaacaccagtattaactaggagctggttcctgtatgagtgtagagttagtaacaccagtattaactaggaggtggttcctgtatgagtgtagagttagtaacaccagtattaaCTAGGAGCTGGTTCCTGTATGGCCATAGTGATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136821 lncRNA downstream 2640 17868555 ~ 17899971 (-) True G118723
TU136819 lncRNA downstream 25965 17864354 ~ 17876646 (-) True G118722
TU136827 lncRNA downstream 30097 17871564 ~ 17872514 (-) True G118726
TU136777 lncRNA downstream 96157 17803916 ~ 17806454 (-) True G118688
TU136778 lncRNA downstream 97079 17804629 ~ 17805532 (-) True G118689
TU136848 lncRNA upstream 18166 17922074 ~ 17922290 (-) True G118746
TU136849 lncRNA upstream 21226 17925134 ~ 17925378 (-) True G118747
TU136853 lncRNA upstream 26405 17930313 ~ 17930529 (-) True G118751
TU136793 lncRNA upstream 75334 17979242 ~ 17982144 (-) True G118699
TU136862 lncRNA upstream 78715 17982623 ~ 17983119 (-) True G118760
XM_036939888.1 mRNA downstream 94080 17733938 ~ 17808531 (-) False LOC110519442
XM_021622078.2 mRNA upstream 27324 17931232 ~ 17947821 (-) True tars2
XM_021622108.2 mRNA upstream 48473 17952381 ~ 17966177 (-) False LOC110536358
XR_005035418.1 mRNA upstream 48473 17952381 ~ 17966177 (-) False LOC110536358
XM_036939971.1 mRNA upstream 48473 17952381 ~ 17966181 (-) True LOC110536358
XM_036939998.1 mRNA upstream 62493 17966401 ~ 17976510 (-) False LOC110536367
TU136666 other downstream 192588 17682022 ~ 17710023 (-) True G118606
TU136678 other downstream 236045 17665330 ~ 17666566 (-) True LOC110536309
TU136544 other downstream 418360 17473534 ~ 17484251 (-) True LOC110520799
TU136508 other downstream 570583 17331115 ~ 17332028 (-) True G118494
TU136456 other downstream 650335 17244124 ~ 17252276 (-) True G118456
TU136791 other upstream 5585 17909493 ~ 17919751 (-) True LOC118938160
TU136786 other upstream 95565 17999473 ~ 18003296 (-) False LOC110536375
TU136787 other upstream 95565 17999473 ~ 18003296 (-) True LOC110536375
TU136915 other upstream 228566 18132474 ~ 18152786 (-) True LOC110536462
TU136972 other upstream 258401 18162309 ~ 18165113 (-) True LOC110534274

Expression Profile