RNA id: TU136793


Basic Information

Item Value
RNA id TU136793
length 2903
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G118699
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17979242 ~ 17982144 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acccacacacacacacacacttacttgcACTTGCACTCACCCAAATCCTCCAGGGCTGAATGCTGACTAGTCTCAAAACAATGTTCATCTGTATTAAACATGCACACTACCAATAGGGGGCATAGAGTTAACCATCACTACACTAGTCCTGCCTATGAACTGCAATAACAAGAGAGGGAATAGAGTTAACCTCCACACTACTGAACCTACTGTTTAAGGGATATATAGATAAACATTTTAAAGGATTTAAATATTTAGATAGCAGACATATCAAATTTGTCCTTGATTGGTGGCCATTATGATGTCATCAGCAGGGGGCAGACTAAAATACATGATGTGGACCATATTTTCAAGGACACAGAAGTCTCTCATAACACAATGTGGGGATATTTAGGGAAGAGTCATGCTACGATCCTCATGGTGACACCATCTTACATGACTTCTCAATTATTGAAgcagagtgactgaatgagagacaaagagaaaaaggtgggatgagagagagagaaattgtgaAAGGGTGAAAGCAGGATGGTGAAAGAGGTATAATGCTTGCTTCTGCTGAGTATGTAAATGAGGGTTATTTTGCATGTACCTTGACAAcccacacgcatgcacacgcatgcacacacaccctgagGACTGGTACACTCTGCCCATCTGTGTGTGTATTAGGGGCCGTGGCTCAGTGCTGTGGCATGCAGCTCAGTTTGGTGtgaagtgaacacacacacacacacacacagggtttggAGAAGTGTATACAGCAGCGTGACCCAGAGTCCCCTGGTACCGGAACCTTCTAGAATGATTTAGAGCCACTGTCAGACACACAGGACTACAACTGGGTTAGAATGATGAAACGCCACCTGATCTGCTGGGCTGGGGAATCACatagtttgatgccattccattgtgtatgtgtgccattcagagggtgaacaggcaagacaaaagatttaagtgcctttgaacggggtatggtagtaggtgccaggcgcaccggtttgttccaagaactgcaacgttgctggggttttcacgctcaacagcttcccgtgtgtatcaagaatggtccaccacccaaaggacatctagccaacttgagaCAATTGTGGGAAgtattgtagtcaacatgggccagcatccctgtgcaactcaatattaggtaaaTACtactaatgtttggtatactcagtttaTGTGCCCTTCAAATGAAAACATTATAGAATAAAACACAACACTGACAGTAATGTTATCTGATGAATAAGGATGAAGCTTTTTCTCAAACCAGACCAAAGGATAGAGGTTGCATTCATACACAGCCCCTCCATTCAACCAGCGACCACAAAATAGTGCCATGTACTGCGGGTGCTACTGAGTACTATGAAGACACCATtgatagtctgtgtgtgtgtgttttgtggtggGGGGGTCGGGGTCGAGTGTGGATGGGGTGAGGGTATTTGTGATattgtgtgcgtgagtgagtgtgtggggaGAGGGGTTGAGGGGTCTGTGTGCGGTACAGTCACATTGTGCCATGATGCTGTTATATAATGGGCTGGCTAGTGGGATGTCAGACAGacatctcagacagagttcagtgtgtcaaatcggagggcctgttgtccggacctctggcagtctctatggaggtgccacagggttcaattctcaggctgactcttttctctgtatacatcaatgatgtcgctctttctgctgatgattctctgatccacttctatgcagacgacaccactctgtatacttctggcccttctttggacaatgtgttaactaacctccagacgagcttcaatgccatacaactctccttccgtggcctcccaactgctcttaaatgcaagtaaaactaaatgcatgctcttcaaccgatcgctgcccgcacctgcccgcccgtccagcatcactactctggacggttctgacttagaatatgtggacaactacaaatacctaggtgtctggttagactgtaaactctccttccagactcacattaagcatctccaatccaacattaaatctagaatcagcttcctatttcgcaaacaaagcatccttcactcatgctgccaaacataccctcggaAAACTGactcctgccgatccttgactttggcgaagtaatttacaaaatagcctccaacactctactcagaaaattggatgcagtctatcacagtgccatcagttttgtcaccaaagcccatatactacccaccactgcgacctgtatgctctcgttggctggccctcgcttcatattcgtcgccagacccactggctccaggtcatctataagtatttgcttggtaaagccctgccttatctcagctcactggtcaccatagcagcacccacctgtagcatgtgctccagcaggtatatttcactggtcaccccaaagccAATCCCTCCTTTGgctgtctttccttccagttctctgctgccaatgactggaactaattgcaaaaatcactgaagctggagacccatatctccctcactaactttaagcactagctgtcagagcagctcacagatcactgcacctgtacatagcccacctgtaaatagcccatccaactacctcatccccatactgttatttattgttttgctcctttgcaccccagtatctctacttgcacattcatcttctgcacatctatcactccagtgtttaattgctaaattgtaattattttgtcactatggcctatttattaccttacctcccttattttacctaatttgcacacactgtatgtagacttttttttctctattgtgttattgactgtatgtttgtttattccatgtgtaactctgtgttgttgtttgtgtcacactgctttgcttaatcttggcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136853 lncRNA downstream 48713 17930313 ~ 17930529 (-) True G118751
TU136849 lncRNA downstream 53864 17925134 ~ 17925378 (-) True G118747
TU136848 lncRNA downstream 56952 17922074 ~ 17922290 (-) True G118746
TU136843 lncRNA downstream 75334 17902611 ~ 17903908 (-) True G118741
TU136821 lncRNA downstream 79271 17868555 ~ 17899971 (-) True G118723
TU136862 lncRNA upstream 479 17982623 ~ 17983119 (-) True G118760
TU136864 lncRNA upstream 2758 17984902 ~ 17985117 (-) True G118762
TU136869 lncRNA upstream 34620 18016764 ~ 18017600 (-) True G118767
TU136882 lncRNA upstream 61204 18043348 ~ 18044371 (-) True G118779
TU136867 lncRNA upstream 65414 18047558 ~ 18047901 (-) True G118765
XM_021622120.2 mRNA downstream 2197 17966401 ~ 17977045 (-) True LOC110536367
XM_036939990.1 mRNA downstream 2199 17966401 ~ 17977043 (-) False LOC110536367
XM_036939998.1 mRNA downstream 2732 17966401 ~ 17976510 (-) False LOC110536367
XM_036939971.1 mRNA downstream 13061 17952381 ~ 17966181 (-) True LOC110536358
XM_021622108.2 mRNA downstream 13065 17952381 ~ 17966177 (-) False LOC110536358
XM_036940026.1 mRNA upstream 17287 17999431 ~ 18009077 (-) False LOC110536375
XM_036934600.1 mRNA upstream 113480 18095624 ~ 18099207 (-) True LOC118936999
XM_036961696.1 mRNA upstream 117227 18099371 ~ 18102318 (-) True LOC118944060
LOC110536479 mRNA upstream 137928 18120072 ~ 18127143 (-) True LOC110536479
XM_021622236.2 mRNA upstream 145203 18127347 ~ 18136431 (-) False LOC110536462
TU136791 other downstream 59491 17909493 ~ 17919751 (-) True LOC118938160
TU136666 other downstream 269219 17682022 ~ 17710023 (-) True G118606
TU136678 other downstream 312676 17665330 ~ 17666566 (-) True LOC110536309
TU136544 other downstream 494991 17473534 ~ 17484251 (-) True LOC110520799
TU136508 other downstream 647214 17331115 ~ 17332028 (-) True G118494
TU136786 other upstream 17329 17999473 ~ 18003296 (-) False LOC110536375
TU136787 other upstream 17329 17999473 ~ 18003296 (-) True LOC110536375
TU136915 other upstream 150330 18132474 ~ 18152786 (-) True LOC110536462
TU136972 other upstream 180165 18162309 ~ 18165113 (-) True LOC110534274
TU137031 other upstream 286404 18268548 ~ 18272107 (-) False khdc4

Expression Profile