RNA id: TU136862


Basic Information

Item Value
RNA id TU136862
length 497
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G118760
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17982623 ~ 17983119 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACTCCAAGGGGtaaatgttttggtttttgccctagctgTTATGTGCCATACATAAGCATCTACCTCTGGTACCAAAAGTTACATGTtcaaatccagcaatagaaagttatttttgttttaagcctatcccaaaccttaacccttaccttaaccattctcaGTTAATGCCTCACCTTAAGATTTTGGAGTTAATTCGTAATTAATGCCTAAGCATCTGCCTTTGGTGCCAAAACCATTCAGAgataatgcctaaccttaagatttcggagttaatgcctaacctaaaAATGTGGAGTTAATGCCTACACTTAATcctaaacactttgaaatttgacatttggaacaacttcaaaatttgacatttgagaaacatggcTGGTTTGGAACCCTCCaccactcaattcaattcaattcaattcaaggggctttattggcatgggaaacatgtgttaacatttccaaagcaagtgaggtagataatatacaaaagtgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136793 lncRNA downstream 479 17979242 ~ 17982144 (-) True G118699
TU136853 lncRNA downstream 52094 17930313 ~ 17930529 (-) True G118751
TU136849 lncRNA downstream 57245 17925134 ~ 17925378 (-) True G118747
TU136848 lncRNA downstream 60333 17922074 ~ 17922290 (-) True G118746
TU136843 lncRNA downstream 78715 17902611 ~ 17903908 (-) True G118741
TU136864 lncRNA upstream 1783 17984902 ~ 17985117 (-) True G118762
TU136869 lncRNA upstream 33645 18016764 ~ 18017600 (-) True G118767
TU136882 lncRNA upstream 60229 18043348 ~ 18044371 (-) True G118779
TU136867 lncRNA upstream 64439 18047558 ~ 18047901 (-) True G118765
TU136902 lncRNA upstream 87415 18070534 ~ 18071226 (-) False G118799
XM_021622120.2 mRNA downstream 5578 17966401 ~ 17977045 (-) True LOC110536367
XM_036939990.1 mRNA downstream 5580 17966401 ~ 17977043 (-) False LOC110536367
XM_036939998.1 mRNA downstream 6113 17966401 ~ 17976510 (-) False LOC110536367
XM_036939971.1 mRNA downstream 16442 17952381 ~ 17966181 (-) True LOC110536358
XR_005035418.1 mRNA downstream 16446 17952381 ~ 17966177 (-) False LOC110536358
XM_036940026.1 mRNA upstream 16312 17999431 ~ 18009077 (-) False LOC110536375
XM_036934600.1 mRNA upstream 112505 18095624 ~ 18099207 (-) True LOC118936999
XM_036961696.1 mRNA upstream 116252 18099371 ~ 18102318 (-) True LOC118944060
LOC110536479 mRNA upstream 136953 18120072 ~ 18127143 (-) True LOC110536479
XM_021622236.2 mRNA upstream 144228 18127347 ~ 18136431 (-) False LOC110536462
TU136791 other downstream 62872 17909493 ~ 17919751 (-) True LOC118938160
TU136666 other downstream 272600 17682022 ~ 17710023 (-) True G118606
TU136678 other downstream 316057 17665330 ~ 17666566 (-) True LOC110536309
TU136544 other downstream 498372 17473534 ~ 17484251 (-) True LOC110520799
TU136508 other downstream 650595 17331115 ~ 17332028 (-) True G118494
TU136786 other upstream 16354 17999473 ~ 18003296 (-) False LOC110536375
TU136787 other upstream 16354 17999473 ~ 18003296 (-) True LOC110536375
TU136915 other upstream 149355 18132474 ~ 18152786 (-) True LOC110536462
TU136972 other upstream 179190 18162309 ~ 18165113 (-) True LOC110534274
TU137031 other upstream 285429 18268548 ~ 18272107 (-) False khdc4

Expression Profile