RNA id: TU136017


Basic Information

Item Value
RNA id TU136017
length 252
lncRNA type intronic
GC content 0.43
exon number 2
gene id G118124
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18034386 ~ 18034961 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actacagcaaccatgctgactccatcactaacaacatacatacaggtaactacagcaaccatgctgactccatcactaacaacatacatactggtaactacagcaaccatgctgactccatcactaacaacatacaggtaactacagcaaccatgctgactccatcactaacaacatacaggtaactacagcaaccatgctgactccatcactaacaacatccatacaggtaactacagcaaccatactgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136014 lncRNA upstream 4677 18028616 ~ 18029709 (+) True G118122
TU135986 lncRNA upstream 29039 18005044 ~ 18005347 (+) True G118109
TU135985 lncRNA upstream 29884 17999528 ~ 18004502 (+) True G118108
TU135979 lncRNA upstream 35271 17998454 ~ 17999115 (+) True G118107
TU135978 lncRNA upstream 48048 17986106 ~ 17986338 (+) True G118106
TU135991 lncRNA downstream 8902 18043863 ~ 18047744 (+) True LOC110536418
TU136000 lncRNA downstream 34557 18069518 ~ 18071225 (+) False LOC110536431
TU136001 lncRNA downstream 34557 18069518 ~ 18071090 (+) False LOC110536431
TU136003 lncRNA downstream 34557 18069518 ~ 18071225 (+) False LOC110536431
TU136006 lncRNA downstream 34557 18069518 ~ 18071090 (+) False LOC110536431
XM_036939811.1 mRNA upstream 502149 17523084 ~ 17532237 (+) False polr3c
XM_036939797.1 mRNA upstream 502149 17523085 ~ 17532237 (+) False polr3c
XM_036939802.1 mRNA upstream 502149 17523085 ~ 17532237 (+) True polr3c
XM_036939779.1 mRNA upstream 519359 17506575 ~ 17515027 (+) False gba
XM_036940069.1 mRNA downstream 17544 18052505 ~ 18071232 (+) False LOC110536431
XM_036940078.1 mRNA downstream 17544 18052505 ~ 18071232 (+) False LOC110536431
XM_036940088.1 mRNA downstream 17544 18052505 ~ 18071232 (+) False LOC110536431
XM_036940106.1 mRNA downstream 42010 18076971 ~ 18086938 (+) False trim108
XM_036940097.1 mRNA downstream 42013 18076974 ~ 18086938 (+) True trim108
TU135495 other upstream 576364 17455765 ~ 17458022 (+) True G117735
TU135611 other upstream 612726 17410632 ~ 17421660 (+) False LOC110520798
TU135623 other upstream 612726 17410632 ~ 17421660 (+) False LOC110520798
TU135631 other upstream 625099 17400013 ~ 17409287 (+) False LOC110520798
TU135467 other upstream 960685 17073201 ~ 17073701 (+) True G117714
TU137226 other downstream 422397 18457358 ~ 18476354 (+) False LOC110536658
TU137225 other downstream 441463 18476424 ~ 18477134 (+) False LOC110536658
TU137398 other downstream 598878 18633839 ~ 18636041 (+) True G119153
TU137405 other downstream 635552 18670513 ~ 18672320 (+) True G119160
TU137542 other downstream 924175 18959136 ~ 18961465 (+) False G119245

Expression Profile