RNA id: TU136902



Basic Information


Item Value
RNA id TU136902
length 538
lncRNA type antisense_over
GC content 0.53
exon number 3
gene id G118799
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18070534 ~ 18073199 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTAGAAAACAGGATTTTATTCAGTTGTGAGAAGAGCACAGTTTGTGTCTGAATTCACAGACAGTCAAATACAACTGGGCATACAGACAAAACAGTAAAGAATTACAATACATCAGCAATAGGCATCCAAACAATTCAGAAAAAAAGATAGAGGGGGAAAAACAAAAGATAAACATGGACAGAGACTCGTGGGTGCAGGTGTCCCATCTAGCATAGTATGTCCTTACAGCAGGCTTCTTCTACACTCAGAGGAGACGGAGTTAGAGGTCTCTTCCAGCAGAACTCCCTCTGCACTCCGAGATAAGATgaagaaatagagggatgagaTGGAGGTATAGAGGGTGGTCTCTTATAGCAGTCTTCCTCTGCACTCCGAGATAAGATgaagaaatagagggatgagaTGGAGGTATAGAGGGTGGTCTCTTATAGCAGTCTTCCTCTGCACTCTGTTGAGCCACAGCAGCACAGTAGCTCCTTTCCCTCCACACTGCCAACCTCGTAGTTATAGTCCCATGTCAACTCTGTCCCCGCCCGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU136867 lncRNA downstream 22633 18047558 ~ 18047901 (-) True G118765
TU136882 lncRNA downstream 26163 18043348 ~ 18044371 (-) True G118779
TU136869 lncRNA downstream 52934 18016764 ~ 18017600 (-) True G118767
TU136864 lncRNA downstream 85417 17984902 ~ 17985117 (-) True G118762
TU136862 lncRNA downstream 87415 17982623 ~ 17983119 (-) True G118760
TU136920 lncRNA upstream 3517 18074743 ~ 18075188 (-) False G118803
TU136922 lncRNA upstream 3517 18074743 ~ 18075188 (-) True G118803
TU136925 lncRNA upstream 5480 18076706 ~ 18077637 (-) True G118805
TU136913 lncRNA upstream 56139 18127365 ~ 18130863 (-) False LOC110536462
TU136960 lncRNA upstream 73412 18144638 ~ 18144986 (-) True G118831
XM_036940026.1 mRNA downstream 61457 17999431 ~ 18009077 (-) False LOC110536375
XM_021622120.2 mRNA downstream 93489 17966401 ~ 17977045 (-) True LOC110536367
XM_036939990.1 mRNA downstream 93491 17966401 ~ 17977043 (-) False LOC110536367
XM_036939998.1 mRNA downstream 94024 17966401 ~ 17976510 (-) False LOC110536367
XM_036939971.1 mRNA downstream 104353 17952381 ~ 17966181 (-) True LOC110536358
XM_036934600.1 mRNA upstream 24398 18095624 ~ 18099207 (-) True LOC118936999
XM_036961696.1 mRNA upstream 28145 18099371 ~ 18102318 (-) True LOC118944060
LOC110536479 mRNA upstream 48846 18120072 ~ 18127143 (-) True LOC110536479
XM_021622236.2 mRNA upstream 56121 18127347 ~ 18136431 (-) False LOC110536462
XR_005035440.1 mRNA upstream 56121 18127347 ~ 18136431 (-) False LOC110536462
TU136786 other downstream 67238 17999473 ~ 18003296 (-) False LOC110536375
TU136787 other downstream 67238 17999473 ~ 18003296 (-) True LOC110536375
TU136791 other downstream 150783 17909493 ~ 17919751 (-) True LOC118938160
TU136666 other downstream 360511 17682022 ~ 17710023 (-) True G118606
TU136678 other downstream 403968 17665330 ~ 17666566 (-) True LOC110536309
TU136915 other upstream 61248 18132474 ~ 18152786 (-) True LOC110536462
TU136972 other upstream 91083 18162309 ~ 18165113 (-) True LOC110534274
TU137031 other upstream 197322 18268548 ~ 18272107 (-) False khdc4
TU137198 other upstream 356336 18427562 ~ 18433668 (-) False G119000
TU137320 other upstream 405228 18476454 ~ 18476753 (-) True G119087

Expression Profile