RNA id: TU136057


Basic Information

Item Value
RNA id TU136057
length 322
lncRNA type antisense_over
GC content 0.38
exon number 1
gene id G118161
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18127656 ~ 18127977 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGCTGGTTTCAATTGATGTACACTACATTGTACATGTTGTACCATACAAATGGATATCTACTATTCCTCAATTTGCTTTTATCTGACTTCCTCATAGTCATGTGGTACAAGGTGTTATATTGGAACCGTACTATTGAGTGAAAGGTGTACCTCTTCAGACACATGTATGAACATACATAGGCTACATATATACACAGCATATCTCCCCCACAATTTTGCATAATTACTTAGTGCATTGCTCAAGATTTCCTGAGAATAGTTGCAGCACAAAACCAAAAGTCCAAGGCAGCTTCACCCCTTTACATAGCAATCTCTTATCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136000 lncRNA upstream 56431 18069518 ~ 18071225 (+) False LOC110536431
TU136003 lncRNA upstream 56431 18069518 ~ 18071225 (+) False LOC110536431
TU136008 lncRNA upstream 56431 18069518 ~ 18071225 (+) False LOC110536431
TU136010 lncRNA upstream 56431 18069518 ~ 18071225 (+) True LOC110536431
TU136001 lncRNA upstream 56566 18069518 ~ 18071090 (+) False LOC110536431
TU136079 lncRNA downstream 27298 18155275 ~ 18155514 (+) True G118179
TU136131 lncRNA downstream 121733 18249710 ~ 18251198 (+) True G118221
TU136132 lncRNA downstream 123245 18251222 ~ 18251806 (+) True G118222
TU136134 lncRNA downstream 126454 18254431 ~ 18255774 (+) True G118223
TU136136 lncRNA downstream 127860 18255837 ~ 18257167 (+) False G118224
XM_021622219.2 mRNA upstream 33513 18090308 ~ 18094143 (+) True LOC110536448
XM_036940106.1 mRNA upstream 40718 18076971 ~ 18086938 (+) False trim108
XM_036940097.1 mRNA upstream 40718 18076974 ~ 18086938 (+) True trim108
XM_036940069.1 mRNA upstream 56424 18052505 ~ 18071232 (+) False LOC110536431
XM_036940078.1 mRNA upstream 56424 18052505 ~ 18071232 (+) False LOC110536431
XR_002475489.2 mRNA downstream 149684 18277661 ~ 18278953 (+) False LOC110536617
XM_036940334.1 mRNA downstream 176509 18304486 ~ 18343804 (+) False LOC110536604
XM_036940336.1 mRNA downstream 176509 18304486 ~ 18343804 (+) False LOC110536604
XM_036940340.1 mRNA downstream 176509 18304486 ~ 18343804 (+) False LOC110536604
XM_036940346.1 mRNA downstream 176509 18304486 ~ 18343804 (+) False LOC110536604
TU135495 other upstream 669634 17455765 ~ 17458022 (+) True G117735
TU135611 other upstream 705996 17410632 ~ 17421660 (+) False LOC110520798
TU135623 other upstream 705996 17410632 ~ 17421660 (+) False LOC110520798
TU135631 other upstream 718369 17400013 ~ 17409287 (+) False LOC110520798
TU135467 other upstream 1053955 17073201 ~ 17073701 (+) True G117714
TU137226 other downstream 329381 18457358 ~ 18476354 (+) False LOC110536658
TU137225 other downstream 348447 18476424 ~ 18477134 (+) False LOC110536658
TU137398 other downstream 505862 18633839 ~ 18636041 (+) True G119153
TU137405 other downstream 542536 18670513 ~ 18672320 (+) True G119160
TU137542 other downstream 831159 18959136 ~ 18961465 (+) False G119245

Expression Profile