RNA id: TU137889


Basic Information

Item Value
RNA id TU137889
length 2244
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G119532
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18765584 ~ 18767871 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTAAAATGGACACAAAAATACCCACCCATTAAGTTTCGCTCAATGACTGTTTCCCAGGCACCTTTTCCCACCGAAGTAAAAGACAACTGTTGATTGTTTCCCTGGGAAATGTAGGCGCCAACATGCATTTAGATCGGAGGGAGAAAACATGCCCAGGAAACCCAGCCAGAGGAGCATATCGACTGGGGAGTTCCTTTCTATCAAATCTGTTGAGGCTTCCCTATTGACAAATACATTGTTTTTTCCCAATTCTGAACAGGATAGGAGCTGGATAGTGCATATGACCGGAGCAGGTATTTGATCCATACAAATCAAATGAAAAACATTTTACAATAAAAAGGTTCACAAGTACACTATTGGCAAATCAGTACTAAAGACCAGATGTGCCACTATGACCATATAAATAAATATCCATAATTATATATGGGATATAATTAATAATCAATGATATGCACAATCCTGCACCCTAACCTAATCCTGTATGGACAATAACCTACTTCATACACGCACCAAGACATCTGAATATAGGCATGTCACTTTAAAACCACTCTGGCAAATACTGGACAATGAATAAACAATGACAATTTTGTAAAAACGCAAAAACAGAATAGTCATACATGGGGataaacatttacaaaaaaataggGGTGAAATCATTTTTTGAAGTAATAATCAGACCAAATGTTGCTCCCTTCGTGTCCATCTCATTTCGACCACGACTAGACAAACATTTTCTAGGAAAACTGCTCATTGCCGCTTCCTCATTTGACTACCCAATGAATGACCATCTCATCATGTTGTGTTTCACTCTATGAATAAAAAACATTGCATAATCTTCTAATAAGTCCTCAACCCTTACTCCCTTTCGACAACCTGATCTCGTATAAGGTAACTCAACTCAGACATGACAAAACATCTCACCAGTTTCCCAACACGAGGCTAGCTGGGCAGTACACAGTACCATTTCAGCAACAGGAGCCACGTCAAGAAGGGGTTGGGGAAAGAAAGAGGCATTTTCTGTTTCTGAAAAATATCCAAGACATTTTGTTTAGTGAACACTGAACAGAAAGAAGCCTCATTTCAGATAGGGGAGATGAGTCAGACTGAAGCTCGAACAGTGTTGAGCTGGGTAGCTACTATATGACACACACAATCACTAGTGCTGTGTATGAAACACAATAAACCTTACTCTGATCATGACAGCGAGGAACCATGGAGAGAACTAACACACAGCGgtgaatccatttgaattcagtcaCTTTTTCACAACATCCCTTTTGTTTTAAACGTTCCAGACATGTTTTACCAtggaagaagtggtcagaaagtagTGACTTTTTGGACCTAAATGCCATAAACATTCAGGAGATCAAGGTGCTCAAAGTTGCctcattttgcataccccacccaaCCAAGAAATGACTAAATCATTGTGTGGTTCGCAAAAGGGTCAACTTTGATGACCTTCATCTTTTGTGTTTTGACATGgaggtccaaaaagtcactttctgaccacttctacaaCAGAcaaatatgtatggaaggtttcCTTCAAACCACTTTTACAACAGAcaaatatgtatggaagGTTTCCTTCAAACCACTTCTACAACAGAcaaatatgtatggaaggtttcCTTCAAACCACTTCTACAACAGAcaaatatgtatggaaggtttcCTTCAAATCAAAAAGGGGTGCTGTCAAAAAGTCATTGAATGTATATGGATTTATCCACAGGGGATTGGGAGAATATATGGCAACAAGGAATGAACAGGGATACAAGATGCAATGAGTACAAAAGGGACAGTAGAGTCAGGGGGATAGAAAGAGTCTGGGAAGGGGAACAATattcagtatacacacacacacacacagagaagactCCAAACAGCATTAGAGTCGCCTCAACGCTCGCTTTTTATCAGTTTTCTTCTTCCCTACAACattactattgctactactactgctggaggtAGTACTGCTTCCATTGGCTCCGTTACCCAGAGCAGCAGAGGGGGCAACCCCTGGCCCCATCGCCCTCTTGGTAGGGTCCCCTGCGTGTTTTTTGGGCTGGGGGCCATCGGCGGGGTCCTGGGGCACCCCCGACGTCCCCCCATGCCCCCCCATGGCATGGATCTCAGTCAGGAGGCGAGCACGGGACGCATACTCTGTATAGTCCTCCAGGAGCAGACGCCCCGCCTCCTCGTTGAGAGCCGACTCAGGGTTGGGATGGATCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137859 lncRNA downstream 56975 18706501 ~ 18708609 (-) False LOC110536927
TU137858 lncRNA downstream 56975 18706818 ~ 18708609 (-) True LOC110536927
TU137852 lncRNA downstream 80683 18684666 ~ 18684901 (-) True G119499
TU137793 lncRNA downstream 132060 18627912 ~ 18633524 (-) False LOC110534340
TU137901 lncRNA upstream 907 18768778 ~ 18769085 (-) True G119536
TU137878 lncRNA upstream 30147 18798018 ~ 18798306 (-) True G119522
TU137906 lncRNA upstream 48169 18816040 ~ 18818685 (-) True G119541
TU137918 lncRNA upstream 52051 18819922 ~ 18820244 (-) True G119553
TU137921 lncRNA upstream 56448 18824319 ~ 18824679 (-) False G119555
NM_001160513.2 mRNA downstream 7788 18755291 ~ 18757796 (-) True josd2
XM_036940644.1 mRNA downstream 56953 18695833 ~ 18708631 (-) False LOC110536927
XM_036940648.1 mRNA downstream 57550 18695833 ~ 18708034 (-) False LOC110536927
XM_021622588.1 mRNA downstream 71764 18688948 ~ 18693820 (-) True LOC110536908
XM_021622578.2 mRNA downstream 93174 18662604 ~ 18672410 (-) False grwd1
XM_036940840.1 mRNA upstream 294223 19062094 ~ 19077953 (-) True LOC110508916
XM_036940896.1 mRNA upstream 716457 19484328 ~ 19494911 (-) False cacng6b
XM_036940887.1 mRNA upstream 716457 19484328 ~ 19499142 (-) False cacng6b
XM_021622771.2 mRNA upstream 738797 19506668 ~ 19513980 (-) False u2af2a
XM_021622797.2 mRNA upstream 738802 19506673 ~ 19513980 (-) False u2af2a
TU137801 other downstream 118921 18637881 ~ 18646663 (-) True LOC110534340
TU137371 other downstream 223087 18541052 ~ 18542497 (-) False LOC110536756
TU137320 other downstream 288831 18476454 ~ 18476753 (-) True G119087
TU137198 other downstream 331916 18427562 ~ 18433668 (-) False G119000
TU137031 other downstream 493477 18268548 ~ 18272107 (-) False khdc4
TU137868 other upstream 31629 18799500 ~ 18801387 (-) True G119512
TU138073 other upstream 280436 19048307 ~ 19049030 (-) True G119663
TU139386 other upstream 716466 19484337 ~ 19488232 (-) False cacng6b
TU139389 other upstream 717778 19485649 ~ 19488232 (-) False cacng6b
TU139490 other upstream 925818 19693689 ~ 19695564 (-) True LOC118944062

Expression Profile