RNA id: TU137993


Basic Information

Item Value
RNA id TU137993
length 503
lncRNA type read_through
GC content 0.33
exon number 3
gene id G119594
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18911359 ~ 18951416 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaggaggagaggatatggagcagatgagagaggaggagaggatagagagtagaagagagaggaggagaggatagagagcagaagagaggaggagaggacagagaggagagagaggaggagaggatagagagtagaagagagaggaggagaggatagagagaataagagagaggaggagaggacagagagaagagagaggaggagaggatagagagtagaagagagaggaggagaggatagagagaataagagagaggaggagaggatagagagaagaagagcaaagaggagaggatagagagtagaagagagagaaggatgggatagagagaagaagagagaggaggagaggatagagagccgaagagagaggaggacaggatagagagtaaaagagagaggaggagaggatggaagggagaagagagaggaggatatgagaagagagaggagaagagagaggagaagaggatagagagaagaagagagaggaggagaggatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137973 lncRNA downstream 23114 18887754 ~ 18888245 (-) True G119584
TU137962 lncRNA downstream 36225 18873475 ~ 18875134 (-) False G119576
TU137963 lncRNA downstream 36225 18873475 ~ 18875134 (-) True G119576
TU137956 lncRNA downstream 41825 18866156 ~ 18869534 (-) True G119574
TU137920 lncRNA downstream 86680 18824387 ~ 18824679 (-) True G119555
TU138025 lncRNA upstream 23518 18974934 ~ 18989032 (-) True G119616
TU138056 lncRNA upstream 77587 19029003 ~ 19029505 (-) True G119646
TU138111 lncRNA upstream 180466 19131882 ~ 19132176 (-) True G119701
TU138114 lncRNA upstream 183432 19134848 ~ 19135061 (-) True G119704
TU138115 lncRNA upstream 184556 19135972 ~ 19136231 (-) True G119705
NM_001160513.2 mRNA downstream 153563 18755291 ~ 18757796 (-) True josd2
XM_036940644.1 mRNA downstream 202728 18695833 ~ 18708631 (-) False LOC110536927
XM_036940648.1 mRNA downstream 203325 18695833 ~ 18708034 (-) False LOC110536927
XM_021622588.1 mRNA downstream 217539 18688948 ~ 18693820 (-) True LOC110536908
XM_036940626.1 mRNA downstream 238949 18662604 ~ 18672410 (-) True grwd1
XM_036940840.1 mRNA upstream 110678 19062094 ~ 19077953 (-) True LOC110508916
XM_036940896.1 mRNA upstream 532912 19484328 ~ 19494911 (-) False cacng6b
XM_036940887.1 mRNA upstream 532912 19484328 ~ 19499142 (-) False cacng6b
XM_021622771.2 mRNA upstream 555252 19506668 ~ 19513980 (-) False u2af2a
XM_021622797.2 mRNA upstream 555257 19506673 ~ 19513980 (-) False u2af2a
TU137868 other downstream 109972 18799500 ~ 18801387 (-) True G119512
TU137801 other downstream 264696 18637881 ~ 18646663 (-) True LOC110534340
TU137371 other downstream 368862 18541052 ~ 18542497 (-) False LOC110536756
TU137320 other downstream 434606 18476454 ~ 18476753 (-) True G119087
TU137198 other downstream 477691 18427562 ~ 18433668 (-) False G119000
TU138073 other upstream 96891 19048307 ~ 19049030 (-) True G119663
TU139386 other upstream 532921 19484337 ~ 19488232 (-) False cacng6b
TU139389 other upstream 534233 19485649 ~ 19488232 (-) False cacng6b
TU139490 other upstream 742273 19693689 ~ 19695564 (-) True LOC118944062
TU139615 other upstream 972682 19924098 ~ 19928460 (-) True LOC110537275

Expression Profile