RNA id: TU138114



Basic Information


Item Value
RNA id TU138114
length 214
lncRNA type antisense_over
GC content 0.60
exon number 1
gene id G119704
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19134848 ~ 19135061 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTTGCATCCTCCCCACCCTTGCTCACCATCCTACAGTCAtgattggtctctctctctctctctctctctctcatccctccccccACCTCCATACCTGTTGCATCCTCCCCAGCCCTGCTCCTCCGCCTACAGCCACTATGGGTAGTCCAGTCTGAGCAGAGACAAACTCTAACATGGGGGCCAGGGGTCCCCAGGCGGTGGGTGGTGGCCTCTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU138111 lncRNA downstream 2672 19131882 ~ 19132176 (-) True G119701
TU138056 lncRNA downstream 105343 19029003 ~ 19029505 (-) True G119646
TU138025 lncRNA downstream 145816 18974934 ~ 18989032 (-) True G119616
TU137993 lncRNA downstream 183432 18911359 ~ 18951416 (-) True G119594
TU138115 lncRNA upstream 911 19135972 ~ 19136231 (-) True G119705
TU138054 lncRNA upstream 4116 19139177 ~ 19139402 (-) True G119644
TU138118 lncRNA upstream 8640 19143701 ~ 19144055 (-) True G119708
TU138132 lncRNA upstream 57799 19192860 ~ 19193084 (-) True G119722
TU138152 lncRNA upstream 72418 19207479 ~ 19214105 (-) True G119735
XM_036940840.1 mRNA downstream 56895 19062094 ~ 19077953 (-) True LOC110508916
NM_001160513.2 mRNA downstream 377052 18755291 ~ 18757796 (-) True josd2
XM_036940644.1 mRNA downstream 426217 18695833 ~ 18708631 (-) False LOC110536927
XM_036940648.1 mRNA downstream 426814 18695833 ~ 18708034 (-) False LOC110536927
XM_021622588.1 mRNA downstream 441028 18688948 ~ 18693820 (-) True LOC110536908
XM_036940896.1 mRNA upstream 349267 19484328 ~ 19494911 (-) False cacng6b
XM_036940887.1 mRNA upstream 349267 19484328 ~ 19499142 (-) False cacng6b
XM_021622771.2 mRNA upstream 371607 19506668 ~ 19513980 (-) False u2af2a
XM_021622797.2 mRNA upstream 371612 19506673 ~ 19513980 (-) False u2af2a
XM_021622816.2 mRNA upstream 371612 19506673 ~ 19513980 (-) False u2af2a
TU138073 other downstream 85818 19048307 ~ 19049030 (-) True G119663
TU137868 other downstream 333461 18799500 ~ 18801387 (-) True G119512
TU137801 other downstream 488185 18637881 ~ 18646663 (-) True LOC110534340
TU137371 other downstream 592351 18541052 ~ 18542497 (-) False LOC110536756
TU137320 other downstream 658095 18476454 ~ 18476753 (-) True G119087
TU139386 other upstream 349276 19484337 ~ 19488232 (-) False cacng6b
TU139389 other upstream 350588 19485649 ~ 19488232 (-) False cacng6b
TU139490 other upstream 558628 19693689 ~ 19695564 (-) True LOC118944062
TU139615 other upstream 789037 19924098 ~ 19928460 (-) True LOC110537275
TU139782 other upstream 1076007 20211068 ~ 20212367 (-) True G121046

Expression Profile