RNA id: TU137702


Basic Information

Item Value
RNA id TU137702
length 481
lncRNA type intronic
GC content 0.40
exon number 1
gene id G119372
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19140187 ~ 19140667 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatcaaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatggggaaaaatgtcagtctctcgatgtgcaaaactgatagagacataccccaagcgacttacagctgtaatcgcagcaaaaggtggcgctacaaagtattaacttaagggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatcttcatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137697 lncRNA upstream 4404 19135562 ~ 19135783 (+) True G119367
TU137636 lncRNA upstream 62000 19077126 ~ 19078187 (+) True G119318
TU137635 lncRNA upstream 77020 19062096 ~ 19063167 (+) True G119317
TU137651 lncRNA upstream 82626 19052808 ~ 19057561 (+) True G119330
TU137540 lncRNA upstream 147418 18973776 ~ 18992769 (+) True G119245
TU137705 lncRNA downstream 7868 19148535 ~ 19148797 (+) True G119375
TU137707 lncRNA downstream 31803 19172470 ~ 19172681 (+) True G119377
TU137716 lncRNA downstream 52582 19193249 ~ 19194234 (+) True G119386
TU137717 lncRNA downstream 54101 19194768 ~ 19194970 (+) True G119387
TU137732 lncRNA downstream 67746 19208413 ~ 19209231 (+) True G119398
XM_036940820.1 mRNA upstream 139977 18994838 ~ 19000210 (+) False LOC110520830
XM_036940811.1 mRNA upstream 139977 18994840 ~ 19000210 (+) False LOC110520830
XM_036940828.1 mRNA upstream 139977 18995233 ~ 19000210 (+) True LOC110520830
XM_036940801.1 mRNA upstream 148820 18984796 ~ 18991367 (+) False LOC118938275
XM_036940852.1 mRNA downstream 166909 19307576 ~ 19347300 (+) True LOC110512786
XM_036940854.1 mRNA downstream 252070 19392737 ~ 19433631 (+) True LOC110534362
XM_021622737.2 mRNA downstream 303464 19444131 ~ 19481383 (+) False LOC110537022
XM_021622742.2 mRNA downstream 303464 19444131 ~ 19481383 (+) True LOC110537022
XM_021622866.2 mRNA downstream 385496 19526163 ~ 19527919 (+) False LOC110537095
TU137542 other upstream 178722 18959136 ~ 18961465 (+) False G119245
TU137405 other upstream 467867 18670513 ~ 18672320 (+) True G119160
TU137398 other upstream 504146 18633839 ~ 18636041 (+) True G119153
TU137225 other upstream 663053 18476424 ~ 18477134 (+) False LOC110536658
TU137226 other upstream 663833 18457358 ~ 18476354 (+) False LOC110536658
TU137673 other downstream 115919 19256586 ~ 19257494 (+) False LOC110503718
TU138223 other downstream 365984 19506651 ~ 19507338 (+) True G119794
TU138235 other downstream 385527 19526194 ~ 19527873 (+) False LOC110537095
TU138236 other downstream 385527 19526194 ~ 19528660 (+) True LOC110537095
TU138343 other downstream 536068 19676735 ~ 19683059 (+) True LOC110537226

Expression Profile