RNA id: TU137723


Basic Information

Item Value
RNA id TU137723
length 1261
lncRNA type intronic
GC content 0.40
exon number 3
gene id G119392
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19227193 ~ 19252592 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggttgtagtagtggttgttatgatagtagagcagtagctgtagtggttgttgAGATAGTAGAGTGGTTGTAATAGTGGTTGTTATTATTGTAGAGTGGTAGAAGTAGTGGTTGTATTGATAGTAGGacagtagttgtagtggttgttatgatagtagagtggtagtagtatagagtggtagtagtagtggttgttatgatagtagagcagtagttgtagtggttgttatgatagtagagcagtagtagtagttgttgttgtgatAGTCGAGTGGTAGTAGAAgttgttgttatgatagtagagtggtagtagtagtggttgttatgatagtaaagcagtaatagtggttgttatgatagtagagtggtagttgtagtggttgttatgatagtagagtggtagtagtagtggttgttatgatagtagagcagtagtagtagtggtagttatgatagtagagtggtagtagtagtggttgttatgatagtagtgtggtagttgtagttgttgttgtgatagtagagtggtagtggtagtggttgttatgatagtagagtggtagttgtagtggttgttatgatagtcaagtggtagtagtagtggttgttatgatagtagagtgttagtagtagtggttgttgtgatagtagagagGTAGTAGTAgcggttgttatgatagtagagcagtagttgtagtggttgttatgatagtagagtggtagtagtagtggttgttatgatagtagagtggtagttgtagtggttgtaatgatagtagagcagtagtagtagtggttgatGTGATAGTACAGAAGTAGTAGAAGTGGTTATTTTGATAGtcgagtggtagtagtagtggttgttctGATAGAagagcagtagttgtagtggttgttaagatagtacagtggtagtagtagtggttgttttgatagtagagtggtagtagtagtggttgttgtgatggaagagtggttgtagtagtggttgttattattgtagagtggtagtagtagtggttgttacgatagtagagcagtagttgtagtggttgttgtgattgtagagtggtagtAGTAGTGGCTGTTGTGATAGAAGAgaagttgtagtagtggttgttattattgtagagtggtagtagtagtggttgtattgatagtagagcagtagttgtagtggttgttatgatagtagagtggtagtagtagtggttgttatgatagtagagtggtagtagtagtggttgttatggtaGTAGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137732 lncRNA upstream 17962 19208413 ~ 19209231 (+) True G119398
TU137717 lncRNA upstream 32223 19194768 ~ 19194970 (+) True G119387
TU137716 lncRNA upstream 32959 19193249 ~ 19194234 (+) True G119386
TU137707 lncRNA upstream 54512 19172470 ~ 19172681 (+) True G119377
TU137705 lncRNA upstream 78396 19148535 ~ 19148797 (+) True G119375
TU137674 lncRNA downstream 25054 19257655 ~ 19258056 (+) True LOC110503718
TU137745 lncRNA downstream 35488 19268089 ~ 19268303 (+) True G119411
TU137746 lncRNA downstream 35922 19268523 ~ 19269489 (+) True G119412
TU137747 lncRNA downstream 37661 19270262 ~ 19271313 (+) True G119413
TU137748 lncRNA downstream 38804 19271405 ~ 19274795 (+) True G119414
XM_036940820.1 mRNA upstream 226983 18994838 ~ 19000210 (+) False LOC110520830
XM_036940811.1 mRNA upstream 226983 18994840 ~ 19000210 (+) False LOC110520830
XM_036940828.1 mRNA upstream 226983 18995233 ~ 19000210 (+) True LOC110520830
XM_036940801.1 mRNA upstream 235826 18984796 ~ 18991367 (+) False LOC118938275
XM_036940852.1 mRNA downstream 74975 19307576 ~ 19347300 (+) True LOC110512786
XM_036940854.1 mRNA downstream 160136 19392737 ~ 19433631 (+) True LOC110534362
XM_021622737.2 mRNA downstream 211530 19444131 ~ 19481383 (+) False LOC110537022
XM_021622742.2 mRNA downstream 211530 19444131 ~ 19481383 (+) True LOC110537022
XM_021622866.2 mRNA downstream 293562 19526163 ~ 19527919 (+) False LOC110537095
TU137542 other upstream 265728 18959136 ~ 18961465 (+) False G119245
TU137405 other upstream 554873 18670513 ~ 18672320 (+) True G119160
TU137398 other upstream 591152 18633839 ~ 18636041 (+) True G119153
TU137225 other upstream 750059 18476424 ~ 18477134 (+) False LOC110536658
TU137226 other upstream 750839 18457358 ~ 18476354 (+) False LOC110536658
TU137673 other downstream 23985 19256586 ~ 19257494 (+) False LOC110503718
TU138223 other downstream 274050 19506651 ~ 19507338 (+) True G119794
TU138235 other downstream 293593 19526194 ~ 19527873 (+) False LOC110537095
TU138236 other downstream 293593 19526194 ~ 19528660 (+) True LOC110537095
TU138343 other downstream 444134 19676735 ~ 19683059 (+) True LOC110537226

Expression Profile