RNA id: TU138159


Basic Information

Item Value
RNA id TU138159
length 1962
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G119741
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19260245 ~ 19262206 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATCTAAGTTAAATCACAGTATAACATGGTACATTCTCAAAAACATagtatatattaatatattcTTTAATTCTCAGCAAAAAATGTAGCTACAAGGTTTTAAAAGTCACTTCTGTTCATGCAGTCACAGACTTTAGTATTAGCGCCTTGATACAACTCAATGATGCTCGATGACAACAGGCTTCAGCACTCCTGATTGGTTTAAAATGACCTCATTCCAAACAGTAGAACTGTTTCCACGGTTTCCACTGTTGGGGCGCTGGGACGAGCGAGCTACCTCAAGGAAAGATGGCCGCCCTGGGTCCTAAGCTTTAACTAGAGTACAACTACACAAACCCCTCCAATGCAAGCCTCTGGGATTTCAATCGTCTAAACATGCAATGATTTCTGGGCTTTTCCAAGGTGTAAGGGGGCAGAAGGATCATGGGGACGACAAaacatctctctataactatGTTACATTGTTTCCAAAATATGGCCGGCCCCTTGACAAAGCAGTATGTGCAGTAGAGAAAAGTAACTCAAAAGACCGTCCAACCTTTTGATCTGTGACAACATGCACAAACCCAACTCAACGACATAGTCCCTCACATTGCAGGATCAAGCACCATCAAGTCCTCCATTCCAGCCAGGATCAACAGCATCCCAAAAAAGGTTACAAAGTCTAAAAGTTCTACATCATGTCAAAGCTACATTCAACTAGGAGAAGCTGGGGGTTCGGCTGTGGGCTGGTCTCAGAGTGAGAGAGCTGAGGTGAATACGTCATACCCATGGAGAGCATGACGCTGCATGACACAGCTCTTTTAGATGACCCACACAGAGAAGCACCATGGCATGGTACGGACTATAGCTTTGGTTTAACAATGTATTTTGGCACTTTAATGCCAAATGCCAAATGTCTGTTTATTCTCTGTTTGACACCTGTTGAGTTGTTCATAAGGTGTAGCCTGAGCATGGTACTGTTCAGATGACCTGATCTGTAAATCACCTGCACTTACACACTACTAGTTCTTCACAGATCCGTATTGTGTAGAGATGAGTGGATCTGAGCAGTGCCTGGCCTAGGTCCACCCCGGGGAACAAGCCAACAGGCCTACAGGTTGTCACATAACTCAGCACTCCAAGTACTGTCAGTCTGCCATTGTATTATCATCACATTAAAGAGGGCAATATTGCTATTGATGACTTATTCCAGTCTTTTTTAATGACAGAACACAGTTAAATCTCTATGTCCCACATAGTAGACTCCACTCCCACATAGTATTCCCTCATAGTGGTATTACTACATCCGTCTTGCTGTGAAACTACATTTCTAATAATGACAGTAGTCAGGTATTGGCACAGTATTGTCCTTCACCATGGTATAATAACTATTGTGTGCTGTAATGACGGCACGTGGATGGCTTTTGGCTTTATGCGATGACCAATTGTGCTTCATAAGATGCATCTCCTTCACACTGGTGAGTGGGTCTTCCAAGCAGGAGGGAATGAAAGGCCATGAACACTATTTTCAAATACACTGCTCAGGGTTTCAATGACTCCTAACGACTAAAGCTAAGCTGTCCTGATTCCTCCACATAATAACGGAATGTTTTACATCTTCAATGTAATGTCAAATGGACTCAGCTCAGAGACTTTCTCACTCAGTCCTCTCAAGCTTATTTGAATATTATGCAGCCATCTAGTGCCAACTGTAGATATTGCAACCAATCatttcctccatcctctctcctaaTAGAGAATGTTGTATTGCTCACGTGTGAAATACTATAGGGATATACTCATGAAAACAGATGACTGGAAACCAATGTGCTTAAAAGCTGTGGAGTAGAAATTTGGCACTGCTTTTTAAAGGCTTCTCACGTCCAAGTTCAGCCCCAGCCGACCTCCCTGCTGCTTGAAATACTAACAGAACAACACATAGATAGATAGAATAacaaagaagaaggagaagaaagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138157 lncRNA downstream 2176 19257625 ~ 19258069 (-) True G119740
TU138145 lncRNA downstream 12778 19220671 ~ 19247467 (-) False G119734
TU138148 lncRNA downstream 20907 19221877 ~ 19239338 (-) False G119734
TU138149 lncRNA downstream 20907 19226432 ~ 19239338 (-) True G119734
TU138152 lncRNA downstream 46140 19207479 ~ 19214105 (-) True G119735
TU138162 lncRNA upstream 1189 19263395 ~ 19267923 (-) True G119742
TU138165 lncRNA upstream 5895 19268101 ~ 19268303 (-) True G119744
TU138168 lncRNA upstream 10621 19272827 ~ 19280003 (-) False G119747
TU138169 lncRNA upstream 14149 19276355 ~ 19280003 (-) True G119747
TU138171 lncRNA upstream 23418 19285624 ~ 19287713 (-) True G119749
XM_036940840.1 mRNA downstream 182292 19062094 ~ 19077953 (-) True LOC110508916
NM_001160513.2 mRNA downstream 502449 18755291 ~ 18757796 (-) True josd2
XM_036940644.1 mRNA downstream 551614 18695833 ~ 18708631 (-) False LOC110536927
XM_036940648.1 mRNA downstream 552211 18695833 ~ 18708034 (-) False LOC110536927
XM_021622588.1 mRNA downstream 566425 18688948 ~ 18693820 (-) True LOC110536908
XM_036940896.1 mRNA upstream 222122 19484328 ~ 19494911 (-) False cacng6b
XM_036940887.1 mRNA upstream 222122 19484328 ~ 19499142 (-) False cacng6b
XM_021622771.2 mRNA upstream 244462 19506668 ~ 19513980 (-) False u2af2a
XM_021622797.2 mRNA upstream 244467 19506673 ~ 19513980 (-) False u2af2a
XM_021622816.2 mRNA upstream 244467 19506673 ~ 19513980 (-) False u2af2a
TU138073 other downstream 211215 19048307 ~ 19049030 (-) True G119663
TU137868 other downstream 458858 18799500 ~ 18801387 (-) True G119512
TU137801 other downstream 613582 18637881 ~ 18646663 (-) True LOC110534340
TU137371 other downstream 717748 18541052 ~ 18542497 (-) False LOC110536756
TU137320 other downstream 783492 18476454 ~ 18476753 (-) True G119087
TU139386 other upstream 222131 19484337 ~ 19488232 (-) False cacng6b
TU139389 other upstream 223443 19485649 ~ 19488232 (-) False cacng6b
TU139490 other upstream 431483 19693689 ~ 19695564 (-) True LOC118944062
TU139615 other upstream 661892 19924098 ~ 19928460 (-) True LOC110537275
TU139782 other upstream 948862 20211068 ~ 20212367 (-) True G121046

Expression Profile