RNA id: TU137752



Basic Information


Item Value
RNA id TU137752
length 1011
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G119415
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19276328 ~ 19286899 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACAGtgcacatcacacaccctgcctaaACTCTCAACTCAGCttcagtacacatcacacaccttgCCTCAACTGTCAACCCAACtgcagtcacacatcacacaccctgcctcaactctcaacccaactacagtcacacatcacacacactgcctcaactctcaacccaactacatcacacatcacacaccctgcctcaattctcaactctcaaccctactacagtcacacatcacacacactgcctcaactctcaatcaaactacagtcacacatcacacaccctccctcaactctcaacccagctacagtcacacatcacaaaccctgcctcaactctcaacccaactacagtacacatcacacaccctgcctcaactgtcaacccaactacagtcacacatcacacaccctgcctcaactctcaacccaactacagtcacacatcacacacactgcctcaactctcaacccaactacagtaacACATCACACagcctgcctcaactctcaagccaactacagtcacacatcacacaccctgcgtcaattctcaacccaactacagtcacacatcacacacactgcctcaactatcaacccaactacagtacacatcacacaccctgcctcaactctcaacctttaacccacctacagtcacacatcacactcTGCCTCAattctcaactctcaacccaactacagtcacacataacacaccctccctcaactctcaacccaactacagtacacatcacacaccctgcctcaactctcaacccaactacagtgacacatcacacaccctgccacaactctcaactctcaaccctactacagtcacacatcacacaccctccctcgactctcaacccaactacagtacacatcacacaccctgcctcaactctcaacccaactacagtcacacatcacacaccctgcctcaactctcaacccagctacagtacacatcacacaccctgcctcaaatCTAAACTCTCAATcaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU137748 lncRNA upstream 1533 19271405 ~ 19274795 (+) True G119414
TU137747 lncRNA upstream 5015 19270262 ~ 19271313 (+) True G119413
TU137746 lncRNA upstream 6839 19268523 ~ 19269489 (+) True G119412
TU137745 lncRNA upstream 8025 19268089 ~ 19268303 (+) True G119411
TU137674 lncRNA upstream 18272 19257655 ~ 19258056 (+) True LOC110503718
TU137754 lncRNA downstream 3310 19288160 ~ 19288443 (+) True G119417
TU137755 lncRNA downstream 4349 19289199 ~ 19289470 (+) True G119418
TU137756 lncRNA downstream 6545 19291395 ~ 19291791 (+) True G119419
TU137762 lncRNA downstream 15886 19300736 ~ 19301057 (+) True G119425
TU137765 lncRNA downstream 18719 19303569 ~ 19303867 (+) True G119428
XM_036961707.1 mRNA upstream 17254 19131905 ~ 19259074 (+) False LOC110503718
XM_036940820.1 mRNA upstream 276118 18994838 ~ 19000210 (+) False LOC110520830
XM_036940811.1 mRNA upstream 276118 18994840 ~ 19000210 (+) False LOC110520830
XM_036940828.1 mRNA upstream 276118 18995233 ~ 19000210 (+) True LOC110520830
XM_036940807.1 mRNA upstream 284961 18984796 ~ 18991367 (+) True LOC118938275
XM_036940852.1 mRNA downstream 22726 19307576 ~ 19347300 (+) True LOC110512786
XM_036940854.1 mRNA downstream 107887 19392737 ~ 19433631 (+) True LOC110534362
XM_021622737.2 mRNA downstream 159281 19444131 ~ 19481383 (+) False LOC110537022
XM_021622742.2 mRNA downstream 159281 19444131 ~ 19481383 (+) True LOC110537022
XM_021622866.2 mRNA downstream 241313 19526163 ~ 19527919 (+) False LOC110537095
TU137673 other upstream 18834 19256586 ~ 19257494 (+) False LOC110503718
TU137542 other upstream 314863 18959136 ~ 18961465 (+) False G119245
TU137405 other upstream 604008 18670513 ~ 18672320 (+) True G119160
TU137398 other upstream 640287 18633839 ~ 18636041 (+) True G119153
TU137225 other upstream 799194 18476424 ~ 18477134 (+) False LOC110536658
TU138223 other downstream 221801 19506651 ~ 19507338 (+) True G119794
TU138235 other downstream 241344 19526194 ~ 19527873 (+) False LOC110537095
TU138236 other downstream 241344 19526194 ~ 19528660 (+) True LOC110537095
TU138343 other downstream 391885 19676735 ~ 19683059 (+) True LOC110537226
TU138416 other downstream 417249 19702099 ~ 19703788 (+) True G119952

Expression Profile