RNA id: TU137751


Basic Information

Item Value
RNA id TU137751
length 1833
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G119415
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19276328 ~ 19286899 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcctcaactctcaacccaactacagtcacacatcacacaccctgcctaaactctcaacccaactacagtcacacatcacacaccctgcctcaactctcaacccaactacagtcacacatcacacacactgcctcaattctcaactctcaacccaactactgtcacacatcacacaccctccctcaactctcaacccaactacagtacacatcacacaccctgcctcaattctcaactctcaacccaactacagtcacacatcacacactctGCCTCAattctcaactctcaacccaactacagtcacacatcacacaccctgcctcaactctcaaacAAACTACAgtaacacatcacacaccctgcctcaactctcaacccaactacagacacacatcacaaaccctgcctcaactctcaacccaactacagtcacacatcacacaccctgcctcaactctcaacccaactacagtcacacatcacacaccctgcctcaattctcaactctcaaccctactacagtcacacatcacacacactgcctcaactctcaatcaaactacagtcacacatcacacaccctccctcaactctcaacccagctacagtcacacatcacaaaccctgcctcaactctcaacccaactacagtacacatcacacaccctgcctcaactgtcaacccaactacagtcacacatcacacaccctgcctcaactctcaacccaactacagtcacacatcacacacactgcctcaactctcaacccaactacagtaacACATCACACagcctgcctcaactctcaagccaactacagtcacacatcacacaccctgcgtcaattctcaacccaactacagtcacacatcacacacactgcctcaactatcaacccaactacagtacacatcacacaccctgcctcaactctcaacctttaacccacctacagtcacacatcacactcTGCCTCAATTCTCAaatctcaacccaactacagtcacacataacacaccctccctcaactctcaacccaactacagtacacatcacacaccctgcctcaactctcaacccaactacagtgacacatcacacaccctgccacaactctcaactctcaaccctactacagtcacacatcacacaccctccctcgactctcaacccaactacagtacacatcacacaccctgcctcaactctcaacccaactacagtcacacatcacacaccctgcctcaactctcaacccagctacagtacacatcacacaccctgcctcaaatCTAAACTCTCAATCAAACTACAGtgcacatcacacaccctgcctaaACTCTCAACTCAGCttcagtacacatcacacaccctgcctcaaatCTCAACTCTCAATCAAACTACAGtgcacatcacacaccctgcctaaACTCTCAACTCAGCttcagtacacatcacacaccttgCCTCAACtgtcaacccaactacagtcacacatcacacaccctgcctcaactctcaacccaactacagtcacacatcacacacactgcctcaactctcaacccaactacagtcacacatcacacaccctgcctcaactctcaacccaactacagtcacacatcacacaccctgccttaactctcaacccaactacagtacacatcacacaccctgcatcaactctcaacccagctacagtcacacatcacacaccctgcctcaactctcaacccaactacagtcacacatcacacaccctgccttaactctcaacccaactacagtacacatcacacaccctgcctcaactctcaacccaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137748 lncRNA upstream 5970 19271405 ~ 19274795 (+) True G119414
TU137747 lncRNA upstream 9452 19270262 ~ 19271313 (+) True G119413
TU137746 lncRNA upstream 11276 19268523 ~ 19269489 (+) True G119412
TU137745 lncRNA upstream 12462 19268089 ~ 19268303 (+) True G119411
TU137674 lncRNA upstream 22709 19257655 ~ 19258056 (+) True LOC110503718
TU137754 lncRNA downstream 1261 19288160 ~ 19288443 (+) True G119417
TU137755 lncRNA downstream 2300 19289199 ~ 19289470 (+) True G119418
TU137756 lncRNA downstream 4496 19291395 ~ 19291791 (+) True G119419
TU137762 lncRNA downstream 13837 19300736 ~ 19301057 (+) True G119425
TU137765 lncRNA downstream 16670 19303569 ~ 19303867 (+) True G119428
XM_036961707.1 mRNA upstream 21691 19131905 ~ 19259074 (+) False LOC110503718
XM_036940820.1 mRNA upstream 280555 18994838 ~ 19000210 (+) False LOC110520830
XM_036940811.1 mRNA upstream 280555 18994840 ~ 19000210 (+) False LOC110520830
XM_036940828.1 mRNA upstream 280555 18995233 ~ 19000210 (+) True LOC110520830
XM_036940807.1 mRNA upstream 289398 18984796 ~ 18991367 (+) True LOC118938275
XM_036940852.1 mRNA downstream 20677 19307576 ~ 19347300 (+) True LOC110512786
XM_036940854.1 mRNA downstream 105838 19392737 ~ 19433631 (+) True LOC110534362
XM_021622737.2 mRNA downstream 157232 19444131 ~ 19481383 (+) False LOC110537022
XM_021622742.2 mRNA downstream 157232 19444131 ~ 19481383 (+) True LOC110537022
XM_021622866.2 mRNA downstream 239264 19526163 ~ 19527919 (+) False LOC110537095
TU137673 other upstream 23271 19256586 ~ 19257494 (+) False LOC110503718
TU137542 other upstream 319300 18959136 ~ 18961465 (+) False G119245
TU137405 other upstream 608445 18670513 ~ 18672320 (+) True G119160
TU137398 other upstream 644724 18633839 ~ 18636041 (+) True G119153
TU137225 other upstream 803631 18476424 ~ 18477134 (+) False LOC110536658
TU138223 other downstream 219752 19506651 ~ 19507338 (+) True G119794
TU138235 other downstream 239295 19526194 ~ 19527873 (+) False LOC110537095
TU138236 other downstream 239295 19526194 ~ 19528660 (+) True LOC110537095
TU138343 other downstream 389836 19676735 ~ 19683059 (+) True LOC110537226
TU138416 other downstream 415200 19702099 ~ 19703788 (+) True G119952

Expression Profile