RNA id: TCONS_00028189


Basic Information

Item Value
RNA id TCONS_00028189
length 3309
RNA type mRNA
GC content 0.51
exon number 4
gene id XLOC_014155
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 32257472 ~ 32461596 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCTCTTCCTCTCCGATTTTGTGACTCTGATAAGAACATGTTTTCAGTTTACTATTGGTCACTTCTGACATCTTGCCTGCATGtggtttgcttgttttgttgtttctgaagTGTCAGAATAGCCTGTAAAGTCTCTCTTCTGGAAATCAGCAACACATTCGAATGTAAAAGGACATGTTTTAGCTCACCCACCACAGTAGAGGCAGACTTTGACAAGCTATAACAAATGATCTGTTGGTTATTTTGTGCTAAAATTTTACAGAGGCACGCTCTAGGGACACTTGAGTAATCTATTTGACATCTTATAAAAAAGGGCATAATATATCCCTTTTAAAGAGCACACTCACTGCACACGCTCACTCCGCCTTTGTGTTGTCTTGTTAGTCGGTTTCCATAGAGGTCTGCTCTGTGTTGAGAGCGTCTGAAGGGAGTGGAGCTGCAGGATGACAGAGTTGCACTAGTATGAGTGGAGTAAAAGCACCCGAGTGCACCTGGATCATGTTTGCTCATCGCTTGTTTCATGACCTCATGACGGGACGGGGTTTCAAGGGCTGTGCTGGAGGCCTGCGCTGAAACTACGAGCCGCGTTGGGATTGTAACGACTTCAATGGGCCACAACACTCACTGAAACACTGGAGGCTACTGAATGAGGTTCTTCCTGCAGTCCTGGAGACTCTCTCTCGGAAGGAAATGATTCCACATGAATTGCATGGACCGCTCTCCCGCAGCAGGTGTGACTTCAATTGCTTAAGACTGAAATCTGTGTCAATCCGACCATAGGCACAGGACACATCCCCTCTCACCACCACTCTCCTCTCTACCCCATTCCCATACTTGCTCCAAGCCAATCAGTAGGAGGGCACACTCTGTTAGCAAGACAAACAGAGACCAGGAGGGAGAGGAAAAGAGCCAAAAAAGGGGAAAGAAAAATCCGGAAAGAGTGGTTCAAGATTTTCAGACACCATGAAGTCAAACCAGGAGCGGAGCAATGAATGCCTGCCCCCAAAGAAGCGTGAAATCCCAGCAAGCACTCTGCCCTCAGAGGAGAAGCCCATGGTGATGGCCCCTGCCAATGAGAGCCAGCGTGGAGGGAACCTGGCTTGGCTTGCCAGTCTGGCCAGTGGGCATGACAAAGGCCGGCTGCACACCAGCACGTCTGCAGAATCAGATGGGCCTCAATATAAACCATTGTCAGCCATGGCTGAGAGCACACCTTCCTCGTCCACACACTCAACCAGAGCTCTATCTGCAGTCACCACCATACCTGCAGTGTACACATCACCTCTCTCCCATTCTCCTAGCGCAATCCAGTACACACCCCTCCCTCACAATATACACTTCATCAACCCTCCTTACTCTGCACCATACGCTGGCTACATTTCTCCACTAGCTCCCCCTTTAGCTGCCACCACTACCACACAACGTGAGATTTATGCCAGCTCCTCCAGTTCTCCAGCATCCAAAATTGATCAGCACCACCAATTGGGCCGTCCTCAAGGCCTGGTCACAACTGACAACACCTCTTCACCTCACTCCACTCAATATGTTCAAATTGCTGGTTCTCCACTAAGCATATCCCCTCGAACTGTTTCGTCACCGCATACACACATGCCCCTACATTTACATCCTCACCACACACTTCCCCTTAGCGGCCCTTCACAGGTCTTAGTCCCATACACAGAAAGTCTTTTACCCAAGAGGGAGGAGATGAGGACCAGGGAGTTGCTGAATGGAGAGCTGGAGAAGGACAGACGTTTTGGTCCATCTTCTGAGTCCAGTGCAGGGAAGCAGGGCAGCACTGCCAAAGGGGGTTCCTCTGCCCAGCAGCACCAGATCCACCAGCAGCAGAGCCCACGTCACTTTGAAGCTCGACATGTTGTGCTACCTGCCGAGTACACGCAGGACAGCACAGCCATGAGGACCTCATTGGTGCTGGTACCTAATAATCATAGCTCCACTAGTGCTGATTCTGGAGGTGCATCAGACAAGCTGCCTCCCTCGACATCCCACCATGAAAAAGGAGGGATTTGTGCTGGCAAACCTGTCTCCCGCAGTTCCTCCTTATCTTCCTCCCTTTCATTTGCTCTTCCCCCTCCACCTGTGGACAATCTTAAGGGAGCAGTTCCAGCGCAGTCTCCTCACGCAGTTATTCAGACCACACTTAACAGCACAGAGTCACTCTCTCTAAGCCTCCCCTCCACTAATTTCTACTCCACCCAGCAGCCTATCATTGGTTACTTTGCCGGCACAGGGCACCAGCAGCCTCTCAGCTACCACACCACCTTACCCCAGCACTTGGTCATCCCTGGAACTCAGCCGGTCATCATCCCAGTAAGTGGAACTGAAGCTACCGCTACATCAACTGCTGCACTGCCCCATGCTTTCGTCACCTCAACAGCCCCCAAAGTGGAGACTTTTGAGTCTCCGGCTCCATACCCCCACCCTGCCACAGCTATGGTTCAAGCCCAGTTGCATTTGCCTGTGGTTCCAGCAACTGCTGGCCTGCTGACAACTCCACCCCCACCCTCAGCTCCTTCAATGCCACCCTACTTCACCAAGGGCTCCATCATCCAATTGGCAGATGGGGAACTGAAGCGGGTGGAAGACCTGAAAACAGAGGATTTCATTCAGAGTGCTGAGATTAGCAACGAGCTGAAGATTGATTCCAGCACTGTAGAGCGCATCGACAGCAGTCATACAGCTAACTTTGCTATAATACAGTTTGCTGTAGGAGCGCAACGCTCACAGGTCAGTGTGGAGGTACTAGTAGAGTATCCTTTCTTTGTGTTCGGCCAGGGCTGGTCATCTTGTTGTCCGGATCGGACTACTCAGCTGCTCGAGCTGCCATGCACCAAGCTTTCAGTGGGTGACGTCTGCATCTCCCTCACCCTGAAGAACCTGAGGAACGGTTCCATCAAGAAGAGCCAGGGGCAAGTCTTGGATGCACCTGCACTCGGTCCACCTCTTAAATCACCAAAAGCACTCTCAAGTGGCGCACGAGGGGGTGTTCGGCACACAGAACAGGAAAATGGACTCGGGCAGTGTGCAGATCAAGGAAGTAGAGGCGGTCAAGGCAATAGAGAAAACGGAGAACTGAGGTTTGGTGAAAGGGACAACTGCAAAGCTCCAACACTCACAGAATCAGAGACCAGCAGTAAACCCACAGGTCGAAAAAGAAGGTGGTCCGCCCCTGAGGGTCGTAAAGTAGAAAATCCAGAAGGAGAGCCCCCTTTAACGTTCCCTAAGCCTTCTTTCATCCCTCAGGAGGTTAAAATCAGTATCGAAGGCAGATCAAATATTGGAAAGTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0048856 anatomical structure development biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0007399 nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-759 Predicted to enable DNA binding activity and RNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II and nervous system development. Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Located in nucleus. Is expressed in cerebellum. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 1. Orthologous to human ATXN1 (ataxin 1).

Ensembl:

ensembl_id ENSDART00000184353

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029969 lncRNA upstream 32766 32257615 ~ 32368512 (+) False XLOC_014155
TCONS_00029968 lncRNA upstream 431512 31954959 ~ 31969766 (+) True XLOC_014150
TCONS_00029965 lncRNA upstream 446550 31943508 ~ 31954728 (+) False XLOC_014149
TCONS_00029966 lncRNA upstream 446550 31943620 ~ 31954728 (+) False XLOC_014149
TCONS_00029967 lncRNA upstream 446550 31943627 ~ 31954728 (+) True XLOC_014149
TCONS_00029970 lncRNA downstream 254982 32716578 ~ 32718796 (+) True XLOC_014158
TCONS_00029971 lncRNA downstream 303687 32765283 ~ 32780918 (+) True XLOC_014159
TCONS_00028211 lncRNA downstream 1003113 33464709 ~ 33477475 (+) False XLOC_014167
TCONS_00029972 lncRNA downstream 1092017 33553613 ~ 33660936 (+) False XLOC_014168
TCONS_00029973 lncRNA downstream 1092038 33553634 ~ 33690360 (+) False XLOC_014168
TCONS_00028186 mRNA upstream 194459 32201991 ~ 32206819 (+) True XLOC_014154
TCONS_00028185 mRNA upstream 232117 32166702 ~ 32169161 (+) True XLOC_014153
TCONS_00028184 mRNA upstream 236746 32158010 ~ 32164532 (+) True XLOC_014152
TCONS_00028182 mRNA upstream 462239 31905002 ~ 31939039 (+) True XLOC_014148
TCONS_00028181 mRNA upstream 462330 31904927 ~ 31938948 (+) False XLOC_014148
TCONS_00028191 mRNA downstream 92278 32553874 ~ 32560591 (+) True XLOC_014156
TCONS_00028192 mRNA downstream 142031 32603627 ~ 32619257 (+) True XLOC_014157
TCONS_00028193 mRNA downstream 345640 32807236 ~ 32820107 (+) False XLOC_014160
TCONS_00028195 mRNA downstream 360673 32822269 ~ 32838822 (+) False XLOC_014161
TCONS_00028196 mRNA downstream 360818 32822414 ~ 32838954 (+) False XLOC_014161
TCONS_00028183 other upstream 342679 32058477 ~ 32058599 (+) True XLOC_014151
TCONS_00028175 other upstream 809738 31591524 ~ 31591540 (+) True XLOC_014144
TCONS_00028174 other upstream 810787 31587931 ~ 31590491 (+) True XLOC_014142
TCONS_00028165 other upstream 1052930 31342023 ~ 31348348 (+) True XLOC_014139
TCONS_00028157 other upstream 1510268 30885312 ~ 30891010 (+) True XLOC_014132
TCONS_00028194 other downstream 352724 32814320 ~ 32818574 (+) True XLOC_014160
TCONS_00028217 other downstream 1270566 33732162 ~ 33765725 (+) False XLOC_014168
TCONS_00028221 other downstream 1674011 34135607 ~ 34135695 (+) True XLOC_014171
TCONS_00028225 other downstream 1745566 34207162 ~ 34207280 (+) True XLOC_014173
TCONS_00028229 other downstream 2281110 34742706 ~ 34746733 (+) False XLOC_014179