RNA id: TU139453


Basic Information

Item Value
RNA id TU139453
length 902
lncRNA type intronic
GC content 0.42
exon number 2
gene id G120786
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19618613 ~ 19619612 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttcctaggccgtcattgaaaataagaatgtgttcttaactgacttgcctagttaaatatgtctctctctcttgatgtctctctctctctcgatgtctctctctcgatgtctctctctctctctctcgatgtctctctctcttgatgtctctctctctctctctctctcttgatgtctctctctctctcgatgtctctctttatgtctctctctctcgatgtctctctctctctcgatgtctctctcttgatgtctctctcttgatgtcgctctctctctcttgatgtctcttgatgtcgctctctctctgtctctctctcgatgtctcttgatgtctctctctcttgatgtctctctcttgatgtctctctattgatgtctctctctctctcttgatgtctcttgatgtctctctctcttgatgtctctctctctcgatgtctctctctctcttgatgtctctggatgtctctctctctcttgatgtctctctcttgatgtctctctctcgatgtctctcttgatgtctctcttgatgtctctctctctctctcaaggtctctcttgatgtctctctcttgatgtctctctctcgatctctctctttatgtctctctctctcttgatgtctctctctcgatgtctctctctctcttgatgtctctctctctgtctctctctctctctcttgatgtctctctctctcttgatgtctctctctctcttgatgtctctctcttgatgtctctctctcgatgtctctctcttgatgtctctctctctcaaattcaaattcaaattcaagctgctttattggcatgaaaaacattgtgtcaatattgccaaagcaacaatgtatacaatatacattgtaacaaaattgtaaatgataacaaataat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139405 lncRNA downstream 43866 19519645 ~ 19574747 (-) True G120745
TU139378 lncRNA downstream 84715 19528134 ~ 19533898 (-) False LOC110537080
TU139379 lncRNA downstream 84715 19528134 ~ 19533898 (-) True LOC110537080
TU139390 lncRNA downstream 119516 19493355 ~ 19499097 (-) False cacng6b
TU139391 lncRNA downstream 119516 19493355 ~ 19499097 (-) True cacng6b
TU139474 lncRNA upstream 41279 19660891 ~ 19750081 (-) False G120801
TU139475 lncRNA upstream 41279 19660891 ~ 19662171 (-) False G120801
TU139473 lncRNA upstream 42213 19661825 ~ 19750081 (-) True G120801
TU139436 lncRNA upstream 62677 19682289 ~ 19683468 (-) True G120772
TU139489 lncRNA upstream 73359 19692971 ~ 19693500 (-) False LOC118944062
XM_036940996.1 mRNA downstream 2895 19601935 ~ 19615718 (-) False LOC110537113
XM_036940955.1 mRNA downstream 23434 19591539 ~ 19595179 (-) True LOC118936409
XM_021623039.2 mRNA downstream 32943 19583047 ~ 19585670 (-) True LOC110537188
XM_036934602.1 mRNA downstream 62371 19554918 ~ 19556242 (-) True LOC110537104
XM_036934601.1 mRNA downstream 62374 19554918 ~ 19556239 (-) False LOC110537104
XM_021622978.2 mRNA upstream 64223 19683835 ~ 19692640 (-) True LOC110537155
XM_036961711.1 mRNA upstream 73504 19693116 ~ 19695560 (-) False LOC118944062
XM_036941035.1 mRNA upstream 83553 19703165 ~ 19706164 (-) True LOC110537161
XM_021619203.2 mRNA upstream 86681 19706293 ~ 19715203 (-) False LOC110534366
NM_001124382.1 mRNA upstream 95962 19715574 ~ 19722525 (-) True il11
TU139386 other downstream 130381 19484337 ~ 19488232 (-) False cacng6b
TU139389 other downstream 130381 19485649 ~ 19488232 (-) False cacng6b
TU138073 other downstream 569583 19048307 ~ 19049030 (-) True G119663
TU137868 other downstream 817226 18799500 ~ 18801387 (-) True G119512
TU137801 other downstream 971950 18637881 ~ 18646663 (-) True LOC110534340
TU139490 other upstream 74077 19693689 ~ 19695564 (-) True LOC118944062
TU139615 other upstream 304486 19924098 ~ 19928460 (-) True LOC110537275
TU139782 other upstream 591456 20211068 ~ 20212367 (-) True G121046
TU139863 other upstream 843070 20462682 ~ 20465789 (-) True LOC110509624
TU139931 other upstream 879284 20498896 ~ 20500587 (-) True G121188

Expression Profile