RNA id: TU138347


Basic Information

Item Value
RNA id TU138347
length 1645
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G119893
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19683793 ~ 19685529 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctccatcctttctctcacaataacaacacaacaGTAAAGTAAAACACTGCATCTCACAAGGACTGGAATAGTCTGACTGCATTGACAGAGTTACGTTAGTTCCAGGGTTCAACGTAtagaatacagacagacagacggacggacggacagacagacagttgtatgtacacacacagggCTACTCATCCAGCAGGGCAAAAGTCCTGACCTAAATTAGTCATCACTACCCAGAAACCCCTAGGGACTGTTGATTACATCACTAGGCCTAAATCAGGCCTGTCTATCACCCCATGGGTTTTAACCCCTTcctcaccctccatccctcttcagACCCCACCCATCTTTCCCTTCCCTCAATCAGCACACTTTTttgctctctttccctccatttcTGTGTTAATTGACCAACTAACACCAGCCTCCTGTTAAAACAATGCAGCCAAGTGACCCAGACAAGTGCCCATCCCCAGCAGTGATCACGTCCACAGCAGCTGCTGCTGTGCATCTCACCACTCTCCTTGTCAGACTGTGGTTGTAGGACCGCAATAGTCCACTAAGGGGCGCCAAACAGCATGGCGGCTGTGTAAACTTACAGTAGATCAGTGTCCACTCAAAGCAGAAGCTGCTCCAAAGCACAGCTCCAGACTCACCGTGGCCTAACCTTAGCAATTAAGAGGAAAAAGctaaactgaccttggatcagatATAAGATAACTTGGTCATATACTAATGCATCCTGTAAATCAGTTATTTCAGGTGATAATTCCAGTTGTGCTGGAGATTATAAAGGAAAATTAGctacaacactaccacaacaacaatgGGAATTACAAACTACTGACACTATATGCATTTACAATAATATATTATGTACATAAAttaattaatgtatttatttatcaagACTATATTAGTGTGAGTCACCATCATTCCTTTCTGTACCATCTTTCATTTAAAGAGATTTGCCCTCAGTCTTTTCCCTCAGTAATAAATAAATACTCTGTTgcaatagatagagagacagagggagagggcaaGAAAAGGGGgacagaaggggagagagtgTAGAGTTGGGGCTGAGAGGGAAagatgtagagggagaggatggtAAGGAGAGGAAGccaggagaggggtgaagagagtaggggaggggtgagagagagaaaaataaagagagggggaagagagagagagagtacactgAGGTTGAGGTGATAATATACAGTGTTCTGCTGGAATCCTCCTCTAgtcaggggttaaaggtcaggtgAAGGTCAAGTGAAAGGGATTGTGGGACGGCCTCAGAACTGCTGCCAGTTGGTGGAACCATCATCATTGGCAAGAGGAGACATTGACCTGTTTTCTGGGGCAGAGAAGTCTCCCCACATGTCCGAGCCGCCTGCAGGGTTGGGGTTCGGCTGCACCACAGAGTTGGAGTTACTGCTGTCCAGGTCTAACAAACAGCCTGAGAACAGAGAGACCAcgatagaattaggaattagaaaaATAAtgtaataggatctctatggagaCAACACACATCAAACCCTTCAATACACACCCTCTACTGCTTTCTCTACATTCATACTCTAACGACAATAGCCTTTTTTCTTGGTTAGCTCataaaactaaaataaaaaacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138377 lncRNA upstream 88626 19593803 ~ 19595167 (+) True G119916
TU138379 lncRNA upstream 89581 19591542 ~ 19594212 (+) False G119916
TU138367 lncRNA upstream 101419 19580821 ~ 19582374 (+) True G119909
TU138335 lncRNA upstream 120943 19552715 ~ 19562850 (+) True G119883
TU138314 lncRNA upstream 164296 19518941 ~ 19519497 (+) True G119866
TU138429 lncRNA downstream 24953 19710482 ~ 19713435 (+) True G119955
TU138462 lncRNA downstream 72929 19758458 ~ 19758725 (+) True G119986
TU138497 lncRNA downstream 134443 19819972 ~ 19821386 (+) False G120018
TU138496 lncRNA downstream 135088 19820617 ~ 19821386 (+) True G120018
TU138511 lncRNA downstream 163970 19849499 ~ 19850437 (+) True G120031
XM_036941028.1 mRNA upstream 734 19676656 ~ 19683059 (+) False LOC110537226
XM_036941018.1 mRNA upstream 734 19676657 ~ 19683059 (+) False LOC110537226
XM_036941027.1 mRNA upstream 734 19676657 ~ 19683059 (+) False LOC110537226
XM_036941014.1 mRNA upstream 38467 19637434 ~ 19645326 (+) True LOC110537142
XM_021623004.2 mRNA upstream 84377 19597513 ~ 19599416 (+) True LOC110537165
XM_036961714.1 mRNA downstream 12962 19698491 ~ 19699519 (+) True LOC118944064
XM_021623137.2 mRNA downstream 89900 19775429 ~ 19778331 (+) False LOC110537243
XM_036941070.1 mRNA downstream 110865 19796394 ~ 19828604 (+) False LOC110537251
XM_036941062.1 mRNA downstream 110866 19796395 ~ 19828604 (+) True LOC110537251
XM_036941059.1 mRNA downstream 147860 19833389 ~ 19892695 (+) False LOC110537257
TU138343 other upstream 734 19676735 ~ 19683059 (+) True LOC110537226
TU138236 other upstream 155133 19526194 ~ 19528660 (+) True LOC110537095
TU138235 other upstream 155920 19526194 ~ 19527873 (+) False LOC110537095
TU138223 other upstream 176455 19506651 ~ 19507338 (+) True G119794
TU137673 other upstream 426299 19256586 ~ 19257494 (+) False LOC110503718
TU138416 other downstream 16570 19702099 ~ 19703788 (+) True G119952
TU138435 other downstream 82741 19768270 ~ 19778335 (+) False LOC110537243
TU138434 other downstream 89931 19775460 ~ 19778335 (+) False LOC110537243
TU138433 other downstream 89956 19775485 ~ 19778335 (+) True LOC110537243
TU138545 other downstream 238543 19924072 ~ 19928477 (+) True G120059

Expression Profile