RNA id: TU138416


Basic Information

Item Value
RNA id TU138416
length 1656
RNA type TUCP
GC content 0.42
exon number 2
gene id G119952
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19702099 ~ 19703788 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACAGATATATTTTACATTGAATAAGAACTCAATGACAATTGTAAAagcaatacataaataaatacatactaCAAATCAGGAGGAAAAAACATAATTTAAATTAGGTTCTGTTCACTAAATTGTCCATTGTCTTCCAACATTTTAGTTAGACTCTACCCTCATTATTGCCTTGATAAGAGAGGTAGTCCCCCTCTTCTCactgtatctctcctcctcctctctctatttccctatagtatctctcctcctcctctctctatttccctatagtatctctcctcctcctctctctatttccctatagtatctctcctcctcatctctctatttCCCcatagtatctctcctcctcatctctctatttccctatagtatctctcctcctcctctctctatttccctatagtatctctcctcctctctctatttccctatcatatctctcctcctcctctctatttccctatagtatctctcctcctcctctctctatttccctatagtatctctcctcctctctctatttccctttagtatctctcctcctctctctatttccctttagtatctctcctcctctctctatttccctatagtatctctcctcctcctctctctatttccctatagtatctctcctcctctctctatttccctttagtatctctcctcctctatttccctttagtatctctcctcctcctctctctatttccctatagtatctctccccctcctctctctatttccctatagtatctctcctcctcctctctctatttccctatagtatctctcctcctcctctctctatttccctatagtatctctcctcctctctatatttccctttagtatctctcctcctctatttccctttagtatctctctcctcctctctctatttacctatagtatctctcctcctcctctctctatttccctatagtatctctcctcctcctcctctctatatttccctatagtatctctcctcctcctcctctctatatttccctatagtatctctcctcctcctcctctctatatttccctatagtatctctcctcctcctctctctatttccctttaatatctctcctcctcctctctctatttccccatagtatctctcctcctctctctatttccctttaGTATATCATCTTTGTCTTATTTTCCACATTCCCTTCGTTGTCTCCTACATCACTTAAGGTCTTTGACAAACACCTTAGTGACATGGAAGCCCAGAAATGTCCTCTCTGGCTGCTCttcgtcctcttcttcttcctccccaTCGTAGCCCACCTCCCCCTGCAGCCTGTAGCCCAGCTTCCTGAAGAAGGCCTCTCCTACTGCAGAGGGGTAGGGGACGTGGGCGTAGACCCTCCTGGcccctgtctgcctctccctctgctccagacTCTGGACCAGCAGTCTGCCGAGGCCCTCTCGGCGGTACCAGCAGCCCACCACCACCCTGCAGAACCTCCTCATCCCCAGACGACAGTCACCCTCCCTGGACACACAGCCCACGATCTCCCCCTCACAGTCCGCCACCCACACCTGCCCTgctgccttctccctctccacgTCTACGATCTCAGGAGACGAGTCTTTGTCCTTGTCCTCTGCCTTGGGTTTGGTCCTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138347 lncRNA upstream 16570 19683793 ~ 19685529 (+) True G119893
TU138377 lncRNA upstream 106932 19593803 ~ 19595167 (+) True G119916
TU138379 lncRNA upstream 107887 19591542 ~ 19594212 (+) False G119916
TU138367 lncRNA upstream 119725 19580821 ~ 19582374 (+) True G119909
TU138335 lncRNA upstream 139249 19552715 ~ 19562850 (+) True G119883
TU138429 lncRNA downstream 6694 19710482 ~ 19713435 (+) True G119955
TU138462 lncRNA downstream 54670 19758458 ~ 19758725 (+) True G119986
TU138497 lncRNA downstream 116184 19819972 ~ 19821386 (+) False G120018
TU138496 lncRNA downstream 116829 19820617 ~ 19821386 (+) True G120018
TU138511 lncRNA downstream 145711 19849499 ~ 19850437 (+) True G120031
XM_036961714.1 mRNA upstream 2580 19698491 ~ 19699519 (+) True LOC118944064
XM_036941028.1 mRNA upstream 19040 19676656 ~ 19683059 (+) False LOC110537226
XM_036941018.1 mRNA upstream 19040 19676657 ~ 19683059 (+) False LOC110537226
XM_036941027.1 mRNA upstream 19040 19676657 ~ 19683059 (+) False LOC110537226
XM_036941014.1 mRNA upstream 56773 19637434 ~ 19645326 (+) True LOC110537142
XM_021623137.2 mRNA downstream 71641 19775429 ~ 19778331 (+) False LOC110537243
XM_036941070.1 mRNA downstream 92606 19796394 ~ 19828604 (+) False LOC110537251
XM_036941062.1 mRNA downstream 92607 19796395 ~ 19828604 (+) True LOC110537251
XM_036941059.1 mRNA downstream 129601 19833389 ~ 19892695 (+) False LOC110537257
XM_036941053.1 mRNA downstream 136093 19839881 ~ 19892697 (+) False LOC110537257
TU138343 other upstream 19040 19676735 ~ 19683059 (+) True LOC110537226
TU138236 other upstream 173439 19526194 ~ 19528660 (+) True LOC110537095
TU138235 other upstream 174226 19526194 ~ 19527873 (+) False LOC110537095
TU138223 other upstream 194761 19506651 ~ 19507338 (+) True G119794
TU137673 other upstream 444605 19256586 ~ 19257494 (+) False LOC110503718
TU138435 other downstream 64482 19768270 ~ 19778335 (+) False LOC110537243
TU138434 other downstream 71672 19775460 ~ 19778335 (+) False LOC110537243
TU138433 other downstream 71697 19775485 ~ 19778335 (+) True LOC110537243
TU138545 other downstream 220284 19924072 ~ 19928477 (+) True G120059
TU138600 other downstream 314911 20018699 ~ 20024983 (+) False casp2

Expression Profile