RNA id: TU138462


Basic Information

Item Value
RNA id TU138462
length 268
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G119986
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19758458 ~ 19758725 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgagagagtatgagagagaaagagtaagagagagagaaaaggagaaagagaagatagtTCTCCCTGTATGTTTATTTACATCCATAAGACAGAATGTATGCACATATCAATGCGGCTGAATGTGTAGCTACTGgtgtgatgtatgtgtgtgtgtgttggtatgcaTATctgaatgtgtgagtgtgtcacaCACAGACTAATGGCATGACACACATTCAAACtcagacagggatcagagaggTTAACTGTAGAGCATATAAACTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138354 lncRNA upstream 8234 19660907 ~ 19750224 (+) True G119899
TU138429 lncRNA upstream 45023 19710482 ~ 19713435 (+) True G119955
TU138347 lncRNA upstream 72929 19683793 ~ 19685529 (+) True G119893
TU138377 lncRNA upstream 163291 19593803 ~ 19595167 (+) True G119916
TU138379 lncRNA upstream 164246 19591542 ~ 19594212 (+) False G119916
TU138497 lncRNA downstream 61247 19819972 ~ 19821386 (+) False G120018
TU138496 lncRNA downstream 61892 19820617 ~ 19821386 (+) True G120018
TU138511 lncRNA downstream 90774 19849499 ~ 19850437 (+) True G120031
TU138515 lncRNA downstream 91011 19849736 ~ 19850902 (+) True G120032
TU138531 lncRNA downstream 121241 19879966 ~ 19881716 (+) True G120048
XM_036961714.1 mRNA upstream 58939 19698491 ~ 19699519 (+) True LOC118944064
XM_036941028.1 mRNA upstream 75399 19676656 ~ 19683059 (+) False LOC110537226
XM_036941018.1 mRNA upstream 75399 19676657 ~ 19683059 (+) False LOC110537226
XM_036941027.1 mRNA upstream 75399 19676657 ~ 19683059 (+) False LOC110537226
XM_036941014.1 mRNA upstream 113132 19637434 ~ 19645326 (+) True LOC110537142
XM_021623137.2 mRNA downstream 16704 19775429 ~ 19778331 (+) False LOC110537243
XM_036941070.1 mRNA downstream 37669 19796394 ~ 19828604 (+) False LOC110537251
XM_036941062.1 mRNA downstream 37670 19796395 ~ 19828604 (+) True LOC110537251
XM_036941059.1 mRNA downstream 74664 19833389 ~ 19892695 (+) False LOC110537257
XM_036941053.1 mRNA downstream 81156 19839881 ~ 19892697 (+) False LOC110537257
TU138416 other upstream 54670 19702099 ~ 19703788 (+) True G119952
TU138343 other upstream 75399 19676735 ~ 19683059 (+) True LOC110537226
TU138236 other upstream 229798 19526194 ~ 19528660 (+) True LOC110537095
TU138235 other upstream 230585 19526194 ~ 19527873 (+) False LOC110537095
TU138223 other upstream 251120 19506651 ~ 19507338 (+) True G119794
TU138435 other downstream 9545 19768270 ~ 19778335 (+) False LOC110537243
TU138434 other downstream 16735 19775460 ~ 19778335 (+) False LOC110537243
TU138433 other downstream 16760 19775485 ~ 19778335 (+) True LOC110537243
TU138545 other downstream 165347 19924072 ~ 19928477 (+) True G120059
TU138600 other downstream 259974 20018699 ~ 20024983 (+) False casp2

Expression Profile