RNA id: TU139543


Basic Information

Item Value
RNA id TU139543
length 2461
lncRNA type antisense_over
GC content 0.37
exon number 5
gene id G120863
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19826932 ~ 19829523 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTATTTCCAGGTCAAACGTCATTACGTTGTTACACTGTTTAGTGAATTCTACAAGGCAGTGGAGGTTTTGTGTTGTATCGTGGGAAATGTAGTTTCCACCAAGAAGAATAACACAGAAATCaccatagaataaacacacacagaatacATACAGTGAGgttgatatacacacacagatacacggaAAGTGACTTTATGTCTTTGAGGAAGAAAAAACCCCAACTGAGAATATAAGACTGATTTTTCAATGGCGCAAAAATATAGTCACAGATTCcctttaaaataaaaacatattttattttagtTGCTCAAAGCTTGAGTGACTCTTTATTACAACATAATAAGGAAGAAAAACCCCCACTAattctctctctgccacctctctctctctctctctctctctctctctctctctctctctctctctctctcatacacactggGGGTTTTGTAGGGGTGTGAGGCGTCAGGTTTTTGTACAGTGGACGAGGAGGGAGGCTAGTCTTTAACTTTCTAGGTTGTTAAAATTAAAAAGGATTGGACCAAGAAATGTAATCatttaagaagaaaaaaatatccTGCACAGTGGAACATTTACATACTAAGACAATTAATTAATACACAAGAGCACCCATTGAACCATTGCATTCATAATATACACATTAACATCATGTTAGCACAATATGTATGGCAGCAAATGGTAGAGTATATCATGATAGTTACATTCAGTAGTATGTGCAGAGTGCAAGCAGCAGTGAAAGATGAAATGAGTGATGAAAGCTATGAGGAAAGCTATCATAACAGGAATGTATTTTGTAACAGACACTTattaacatactgtatatgtacacACCACATTCACAACCATCGAAGAAAAGCCAGATTGCCAAAGTGATGATAGGTCAAATGTTGTTTTAGGCCAAAAGGTAAAAAAGTGCTCACTTATCAATGAGTATCAACATCACATGAGTAATAATACAACAAAAATGCATTATCAGATAATGTACGAGACACAGAGAAGATATTTGCCATCATTATGGAATACTAGCTACAATATAGTAGAAATAACTTACAACAACTAACCTGGTCAAAACCTACACAAGACTCCACAATCACAATACAGTATTACACCACTGAAATGTCATGATTTTTACACACTGTTGTTGTCACAATAAATACTATTACTCTAGGGTTGGTATATACTCTCATTTAACGGTAGACCCCTTGTTGGAACAACTATTTTCAGGATGTTCCTAACAAATCTATGTTCCTAACAAATCATATATCGTCTTCTACTGTGATCATATACTTCACACTTGGTAGGTTGTTAAAATGACTAGACATTCACATTCATATCTAGTCTATGATAAATTCTatgatatatagaatatatagaagTCTTCACACACAAAGCAAACACTGCTCACGTTGTTAGATCTCACTCCACTGCAGCCACTATACATCATACTGAGGTCAATGTAGACTTTCCAAGTACTAGTTGAATGGCATTGTTCCATAGGGGTTGAATGGCTTTGCTCCATATATTACCTCTACCCCTATCTGAtgcattcattttttatttaacaaggcaagtcagttaagaacaaattccctTTCAACCAAGTGAAGGACAATACGGGAAGTTAATTACTGAACATATGTGTTGGAATGTTTATCCTCTTAAATGCTAATACTATAAAGGTTTTTATTGTGATGTCAATCGTTAAAAAGTACCATAAAAAATTGTCATTGATTAATTAATGATTACCTCTATGAGGTAAGTCACCTAAAAATAAATGTCATAAATTACTTGGGCATTGGTAAAAGATCATTACAAATTATCATTAATAACTTACAGTAATAAATACTTTAGGCAgtttaaaagaaaatgactgaagacacacacacacacacacacataatgacacaAAGTAAACATAAATCCTCTTTGACACGTTCTCTCATGATGCCTGCATTATCATCCCCGACCCTATTCCCAACACACGCCATACACACACCCGACACTAAGCTGCTACTTCATATGGAAGCTCCTTTCCATAACAGTGCATATCGCTAGTCCTGCACTTTAAAAGTCCAATTCAACCTCAAAAGGATAAAAAAAAGTTTTGTTTTGAACTTAAACTACATTACAGTATCTATGCACAAGGGGCTTGTCTAACCCTGTAACCCTGTTCTCTAACTGTTCCACTATCTACGGATTCGCTGACAatcccttcttctccttctcttccgtCGGAAACTCAACCATTGGAACTTTCTCCGTTGTCGGGGAGATGGGCAGGGTGACCATACCCTCTGGGGGAGGAGATTGGGTTCCTGCAGTGCCGGCGAATCCTTTGGCAATGTCGTCAAAGGTCCGCCCCTTGGTCTCCGGGACTTTGAAGTAGGTGAAGACGATGAAGAATATGAGGAAGATCATGAAGATGATGAAGACGTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139553 lncRNA downstream 39457 19787267 ~ 19787475 (-) True G120872
TU139552 lncRNA downstream 40072 19786639 ~ 19786860 (-) True G120871
TU139550 lncRNA downstream 43523 19783192 ~ 19783409 (-) True G120869
TU139537 lncRNA downstream 48368 19777388 ~ 19778564 (-) True G120858
TU139532 lncRNA downstream 73296 19753418 ~ 19753636 (-) True G120854
TU139597 lncRNA upstream 50765 19880288 ~ 19881915 (-) True G120916
TU139609 lncRNA upstream 61677 19891200 ~ 19892651 (-) True G120925
TU139640 lncRNA upstream 124026 19953549 ~ 19953780 (-) True G120953
TU139687 lncRNA upstream 223131 20052654 ~ 20053172 (-) True G120997
TU139709 lncRNA upstream 240080 20069603 ~ 20076245 (-) True G121005
XM_021623119.2 mRNA downstream 53842 19762781 ~ 19773090 (-) True LOC110537231
NM_001124382.1 mRNA downstream 104407 19715574 ~ 19722525 (-) True il11
XM_021619203.2 mRNA downstream 111729 19706293 ~ 19715203 (-) False LOC110534366
XM_036941035.1 mRNA downstream 120768 19703165 ~ 19706164 (-) True LOC110537161
XM_036961711.1 mRNA downstream 131372 19693116 ~ 19695560 (-) False LOC118944062
XM_021623177.2 mRNA upstream 84932 19914455 ~ 19923922 (-) False LOC110537264
XM_021623186.2 mRNA upstream 84932 19914455 ~ 19923922 (-) True LOC110537264
XM_021623198.2 mRNA upstream 94540 19924063 ~ 19928533 (-) False LOC110537275
XM_036941106.1 mRNA upstream 100011 19929534 ~ 19943375 (-) False LOC110534373
XM_036941098.1 mRNA upstream 100011 19929534 ~ 19943377 (-) True LOC110534373
TU139490 other downstream 131368 19693689 ~ 19695564 (-) True LOC118944062
TU139386 other downstream 338700 19484337 ~ 19488232 (-) False cacng6b
TU139389 other downstream 338700 19485649 ~ 19488232 (-) False cacng6b
TU138073 other downstream 777902 19048307 ~ 19049030 (-) True G119663
TU137868 other downstream 1025545 18799500 ~ 18801387 (-) True G119512
TU139615 other upstream 94575 19924098 ~ 19928460 (-) True LOC110537275
TU139782 other upstream 381545 20211068 ~ 20212367 (-) True G121046
TU139863 other upstream 633159 20462682 ~ 20465789 (-) True LOC110509624
TU139931 other upstream 669373 20498896 ~ 20500587 (-) True G121188
TU139978 other upstream 797034 20626557 ~ 20627700 (-) True G121208

Expression Profile