RNA id: TU138544


Basic Information

Item Value
RNA id TU138544
length 499
lncRNA type antisense_over
GC content 0.51
exon number 2
gene id G120059
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19924072 ~ 19928477 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCGGATTTTATTTTCCACAAAAGTCCATGATATTaatttacacaaaaaaaatactatttgCCTTAAATACAGATGGCTGGCtgagaaagaaaaatagaaattAAAAGAGCTTTCCCCTTAACACTCTTCTTttattgaaatatatttttcactCCCCCTATTTCCAATTACCCCGTTATTTTTCAAATTTAGAATGCCTTACCATGGTTGAGAGCATACTGACACAGAATATAATCACCCCAAAAATACCGACAAAACCCACCGCCATCTCCTCCCCACCGCCATCTCCCCACCGCCATTTCCTAAATACTTAAAGAATAATAGGGATGAAACATTACAAAGAGTTCTCTCccatctcctgtctctctctctctttcctccttttGTCCCGACTCAGGCACCGTAGACGCTCTCGTTACTGTAGGTCATGTATAGGAACAGGTCCTCTTCATGGTGCTCCTGTGAGGGACCGGggaggacagggacagggagggaaA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138531 lncRNA upstream 42356 19879966 ~ 19881716 (+) True G120048
TU138515 lncRNA upstream 73170 19849736 ~ 19850902 (+) True G120032
TU138511 lncRNA upstream 73635 19849499 ~ 19850437 (+) True G120031
TU138497 lncRNA upstream 102686 19819972 ~ 19821386 (+) False G120018
TU138567 lncRNA downstream 33090 19957694 ~ 19957965 (+) True G120079
TU138576 lncRNA downstream 36370 19960974 ~ 19961182 (+) True G120085
TU138572 lncRNA downstream 62799 19987403 ~ 19990796 (+) True G120082
TU138602 lncRNA downstream 103219 20027823 ~ 20030912 (+) True casp2
TU138627 lncRNA downstream 128065 20052669 ~ 20053169 (+) True G120126
NM_001124455.1 mRNA upstream 13720 19898319 ~ 19910352 (+) True ecac
XM_036941057.1 mRNA upstream 31374 19839881 ~ 19892698 (+) True LOC110537257
XM_036941053.1 mRNA upstream 31375 19839881 ~ 19892697 (+) False LOC110537257
XM_036941059.1 mRNA upstream 31377 19833389 ~ 19892695 (+) False LOC110537257
XM_036941062.1 mRNA upstream 95468 19796395 ~ 19828604 (+) True LOC110537251
XM_036941114.1 mRNA downstream 21486 19946090 ~ 19953207 (+) True LOC110537283
XM_036941117.1 mRNA downstream 39310 19963914 ~ 19971980 (+) True LOC110537299
XM_036941134.1 mRNA downstream 93998 20018602 ~ 20030933 (+) False casp2
XM_036941141.1 mRNA downstream 94073 20018677 ~ 20030933 (+) False casp2
XM_036941136.1 mRNA downstream 94160 20018764 ~ 20030933 (+) False casp2
TU138435 other upstream 145737 19768270 ~ 19778335 (+) False LOC110537243
TU138434 other upstream 145737 19775460 ~ 19778335 (+) False LOC110537243
TU138433 other upstream 145737 19775485 ~ 19778335 (+) True LOC110537243
TU138416 other upstream 220284 19702099 ~ 19703788 (+) True G119952
TU138343 other upstream 241013 19676735 ~ 19683059 (+) True LOC110537226
TU138600 other downstream 94095 20018699 ~ 20024983 (+) False casp2
TU138669 other downstream 221129 20145733 ~ 20157110 (+) True zyx
TU138728 other downstream 246478 20171082 ~ 20171381 (+) True G120211
TU138741 other downstream 254804 20179408 ~ 20184625 (+) False LOC110537348
TU138791 other downstream 395135 20319739 ~ 20320256 (+) True G120259

Expression Profile