RNA id: TU138567


Basic Information

Item Value
RNA id TU138567
length 272
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G120079
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19957694 ~ 19957965 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atccacattattgTATAAGAGAGGATTTGacaggtgtaagcaatatggtgaAATGTATTCAGAGACTATCAGAGGGCAATGTGGAGCTATTGCCATATTACTAACACCTGTCATTGTCTTAGAGCTCCACAAGTGCATGGGTTGTAGGGTCTAGGAGTCCATTTTGGATTGGCCTActgtttttataaaaaaaaaaaaaaaagtattaacaataaatcaatacaggaagtacatgtgggaacaagtgtatatatatatacacaatatacaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138543 lncRNA upstream 33090 19924072 ~ 19924604 (+) False G120059
TU138544 lncRNA upstream 33090 19924072 ~ 19924604 (+) False G120059
TU138531 lncRNA upstream 75978 19879966 ~ 19881716 (+) True G120048
TU138515 lncRNA upstream 106792 19849736 ~ 19850902 (+) True G120032
TU138511 lncRNA upstream 107257 19849499 ~ 19850437 (+) True G120031
TU138576 lncRNA downstream 3009 19960974 ~ 19961182 (+) True G120085
TU138572 lncRNA downstream 29438 19987403 ~ 19990796 (+) True G120082
TU138602 lncRNA downstream 69858 20027823 ~ 20030912 (+) True casp2
TU138627 lncRNA downstream 94704 20052669 ~ 20053169 (+) True G120126
TU138698 lncRNA downstream 162947 20120912 ~ 20126334 (+) False G120191
XM_036941114.1 mRNA upstream 4487 19946090 ~ 19953207 (+) True LOC110537283
NM_001124455.1 mRNA upstream 47342 19898319 ~ 19910352 (+) True ecac
XM_036941057.1 mRNA upstream 64996 19839881 ~ 19892698 (+) True LOC110537257
XM_036941053.1 mRNA upstream 64997 19839881 ~ 19892697 (+) False LOC110537257
XM_036941059.1 mRNA upstream 64999 19833389 ~ 19892695 (+) False LOC110537257
XM_036941117.1 mRNA downstream 5949 19963914 ~ 19971980 (+) True LOC110537299
XM_036941134.1 mRNA downstream 60637 20018602 ~ 20030933 (+) False casp2
XM_036941141.1 mRNA downstream 60712 20018677 ~ 20030933 (+) False casp2
XM_036941136.1 mRNA downstream 60799 20018764 ~ 20030933 (+) False casp2
XM_036941153.1 mRNA downstream 73926 20031891 ~ 20093715 (+) False LOC110534391
TU138545 other upstream 29217 19924072 ~ 19928477 (+) True G120059
TU138435 other upstream 179359 19768270 ~ 19778335 (+) False LOC110537243
TU138434 other upstream 179359 19775460 ~ 19778335 (+) False LOC110537243
TU138433 other upstream 179359 19775485 ~ 19778335 (+) True LOC110537243
TU138416 other upstream 253906 19702099 ~ 19703788 (+) True G119952
TU138600 other downstream 60734 20018699 ~ 20024983 (+) False casp2
TU138669 other downstream 187768 20145733 ~ 20157110 (+) True zyx
TU138728 other downstream 213117 20171082 ~ 20171381 (+) True G120211
TU138741 other downstream 221443 20179408 ~ 20184625 (+) False LOC110537348
TU138791 other downstream 361774 20319739 ~ 20320256 (+) True G120259

Expression Profile