RNA id: TU139709


Basic Information

Item Value
RNA id TU139709
length 2059
lncRNA type intronic
GC content 0.41
exon number 5
gene id G121005
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20069603 ~ 20076245 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagtgatagtggtatagaaagagctgtaatgaaggagtgatagtggtatagaaagaggtgtacGGAAGGAGTgctagtggtatagaaagacttGTAGTGAAGGAGTGGTAGTGGTAAAGAAAGAGGTGTAGTaaaggagtgatagtggtatagaaagagctgtaatgaaggagtgatagtggtatagaaagaggtgtacGGAAGGAGTgctagtggtatagaaagacttgtagtgaaggagtggtagtggtagagaaagaggtgtagtgaaggagtgatagtgatatagaaagaggtgtagtgaaggagtgatagtggtagagaaagaggtgtaatgaaggagtgatagtggtatagagagacgtgtagtgaaggagtgatagtggtagagaaagaggtgtagtgaaggagtgatagtggtatagaaagaggtgtagtgaagCAGTGATAGTGGgatagaaagaggtgtagtgaaggattgatagtggtatagaaagacttGTAGAGAaggagtggtagtggtatagaaagaggtgtaggGAAGGAGTgctagtggtatagaaagaggtgtagtaaaggagtgatagtggtatagaaagacttgtagtgaaggagtggtagtggtatagaaagaggtgtagtaAAGGAGTgacagtggtatagaaagaggtgtagtgaaggagtgatagtggtatagaaagaggtgtagtgaaggagtgatagtggtatagaaagaggtgtagtaaaggagtgatagtggtatagaaagacttgtagtgaaggagtggtagtggtatagaaagaggtgtagtgaaggagtgatagtggtatagaaagaacTGTAatgaaggagtgatagtggtatagaaagaggtgtacGGAAGGAGTgctagtggtatagaaagacttGTAGTGAAGGAGTGGTAGTGGTAAAGAAAGAGGTGTAGTaaaggagtgatagtggtatagaaagagctgtaatgaaggagtgatagtggtatagaaagaggtgtacGGAAGGAGTgctagtggtatagaaagacttgtagtgaaggagtggtagtggtagagaaagaggtgtagtgaaggagtgatagtggtatagaaagaggtgtagtgaaggagtgatagtggtagagaaagaggtgtaatgaaggagtgatagtggtatagagagacgtgtagtgaaggagtgattgtggtatagaaagaggtgtaggGAAGGAGTgctagtggtatagaaagacttgtagtgaaggagtggtagtggtagagaaagaggtgtagtgaaggagtgatagtggtatagaaagagctgtagtgaagcagtgatagtggtatagaaagaggtgtagtgaaggagtgatagtggtatagaaagaagTGTATTGAAGGAGTGATTGTGATATATAAAGATgtgtagtgaaggagtgatagtggtatagaaagaggtttAGTAAAGgattgatagtggtatagaaagaggtgttgTGAAGGAGTGCTATCGGTATAGAAAGATGTGTAGTGAAGgattgatagtggtatagaaagaggtgtagtgaaagggtgatagtggtatagaaagaggtgtggtgaaggagtgatagtgatataaagaggtgtagtgaaggaTTGATAcggtatagaaagaggtgtagtgaaggagtgatagtggtatataaagaggtgtagtgaaggagtgatagtggtatagaaagaggtgtagtgaaggagtgatagtggtatataaagaggtgtagtgaaggagagatagtggtatagaaagaggtggagtgaaggacaGATAGGtgtatagaaagaggtgtagtgaaagattgatagtggtatagaaagatgTGTGGTGAAGgaatgatagtggtatagaaagaggtgtagtgaaggattgatagtggtatagaaagaggtttAGTAAAGgattgatagtggtatagaaagaggtgttgTGAAGGAGTGCTACTGGTATAGAAAGATGTGTAGTGAAGgattgatagtggtatagaaagaggtgtagtgaaagggtgatagtggtatagaaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139687 lncRNA downstream 16431 20052654 ~ 20053172 (-) True G120997
TU139640 lncRNA downstream 115823 19953549 ~ 19953780 (-) True G120953
TU139609 lncRNA downstream 176952 19891200 ~ 19892651 (-) True G120925
TU139597 lncRNA downstream 187688 19880288 ~ 19881915 (-) True G120916
TU139543 lncRNA downstream 240080 19826932 ~ 19829523 (-) True G120863
TU139747 lncRNA upstream 45228 20121473 ~ 20126339 (-) False G121030
TU139748 lncRNA upstream 45228 20121473 ~ 20126339 (-) False G121030
TU139751 lncRNA upstream 46997 20123242 ~ 20126339 (-) True G121030
TU139758 lncRNA upstream 57177 20133422 ~ 20133686 (-) True G121036
TU139784 lncRNA upstream 69943 20146188 ~ 20156383 (-) True G121048
XM_021623243.2 mRNA downstream 62760 20001127 ~ 20006843 (-) False LOC110537306
XM_021623252.2 mRNA downstream 62760 20001127 ~ 20006843 (-) True LOC110537306
XM_036933452.1 mRNA downstream 72382 19987402 ~ 19997221 (-) False gstk1
XM_036933463.1 mRNA downstream 72383 19987402 ~ 19997220 (-) False gstk1
XM_036941164.1 mRNA upstream 18176 20094421 ~ 20131881 (-) False LOC110537330
XM_036941166.1 mRNA upstream 18176 20094421 ~ 20131881 (-) False LOC110537330
XM_036941174.1 mRNA upstream 18176 20094421 ~ 20131881 (-) False LOC110537330
XM_036941185.1 mRNA upstream 18176 20094421 ~ 20131881 (-) True LOC110537330
XM_021590531.2 mRNA upstream 236381 20312626 ~ 20318150 (-) False LOC110509570
TU139615 other downstream 141143 19924098 ~ 19928460 (-) True LOC110537275
TU139490 other downstream 374039 19693689 ~ 19695564 (-) True LOC118944062
TU139386 other downstream 581371 19484337 ~ 19488232 (-) False cacng6b
TU139389 other downstream 581371 19485649 ~ 19488232 (-) False cacng6b
TU138073 other downstream 1020573 19048307 ~ 19049030 (-) True G119663
TU139782 other upstream 134823 20211068 ~ 20212367 (-) True G121046
TU139863 other upstream 386437 20462682 ~ 20465789 (-) True LOC110509624
TU139931 other upstream 422651 20498896 ~ 20500587 (-) True G121188
TU139978 other upstream 550312 20626557 ~ 20627700 (-) True G121208
TU140219 other upstream 980353 21056598 ~ 21058849 (-) True G121421

Expression Profile