RNA id: TU138698


Basic Information

Item Value
RNA id TU138698
length 1203
lncRNA type intronic
GC content 0.56
exon number 5
gene id G120191
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20120912 ~ 20126334 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGgtggtacagtatagtgatgtggtataggaatcaacaccactggtggtacagaatagtgatgtggtataatgtaggaatcaacaccactggtggtaaAGAATAGTGATGTGGTGTAATGtaggtatcaacaccactggtggtacagtaTAGTTATGAGGTATaggaatcaacaccactggtgttacagaatagtgatgtggtgtaatgtaggaatcaacaccactggtgtTAGAGAAAAGTGATGTGGTATAATGTaggaatcaacaccactggtgttacagaatagtgatgtggtataatgtaggaatcaacaccactggtggtacagtaTAGTTATGAGGTATaggaatcaacaccactggtgttacagaatagtgatgtggtgtaatgtaggaatcaacaccactggtgttacagaatagtgatgtggtataatgtaggaatcaacaccactggtggtacagtatagtgatgtggtttaatgtaggaatcaacaccactggtggtacagaatagtgatgtggtataggaatcaacaccactggtggtacagaatagtgatgtggtataggaATCAACAACACTGGTGGTAatgaatagtgatgtggtataggaTTCAACAACACTGgtggtacagtatagtgatgtggtataatgtaggaatcaacaccactggtgttacagaatagtgatgtggtataggaTTCAACAACACTGgtggtacagtatagtgatgtggtataatgtaggaatcaacaccactggtggtacagaatagtgatgtggtataatgtaggaatcaacatcactggtggtacagaatagtgatgtggtataatgtaggaatcaacaccactggtggtacagaatagtgatgtggtataatgtaggaatcaacaccactggtggtacagaataGTGATGTGGTATAATGTaggaatcaacaccactggtagtacagaatagtgatgtggtataatgtaggtatcaacaccactggtagtacagaatagtgatgtggtataatgtaggtatcaacaccactggtggtacagaatagtgatgtggtataatgtaggtatcaacaccactggtggtacagaatagtgatgtggtataatgtaggtatcaacaccactggtggtacagtatagtgatgtTGTATTggaatcaacaccactggtggtacagaatagtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138627 lncRNA upstream 67743 20052669 ~ 20053169 (+) True G120126
TU138602 lncRNA upstream 90000 20027823 ~ 20030912 (+) True casp2
TU138572 lncRNA upstream 130116 19987403 ~ 19990796 (+) True G120082
TU138576 lncRNA upstream 159730 19960974 ~ 19961182 (+) True G120085
TU138567 lncRNA upstream 162947 19957694 ~ 19957965 (+) True G120079
TU138710 lncRNA downstream 7440 20133774 ~ 20133976 (+) True G120195
TU138726 lncRNA downstream 43466 20169800 ~ 20170118 (+) True G120209
TU138727 lncRNA downstream 44211 20170545 ~ 20170756 (+) True G120210
TU138729 lncRNA downstream 45715 20172049 ~ 20172445 (+) True G120212
TU138730 lncRNA downstream 47406 20173740 ~ 20174487 (+) False G120213
XM_036941148.1 mRNA upstream 27195 20050075 ~ 20093717 (+) True LOC110534391
XM_036941153.1 mRNA upstream 27197 20031891 ~ 20093715 (+) False LOC110534391
XM_036941134.1 mRNA upstream 89979 20018602 ~ 20030933 (+) False casp2
XM_036941141.1 mRNA upstream 89979 20018677 ~ 20030933 (+) False casp2
XM_036941136.1 mRNA upstream 89979 20018764 ~ 20030933 (+) False casp2
XM_036941198.1 mRNA downstream 19376 20145710 ~ 20165887 (+) False zyx
XM_036941196.1 mRNA downstream 19802 20146136 ~ 20165887 (+) False zyx
XM_021623314.2 mRNA downstream 52920 20179254 ~ 20184791 (+) False LOC110537348
XM_021623307.2 mRNA downstream 52920 20179254 ~ 20185250 (+) False LOC110537348
XM_021623329.2 mRNA downstream 63951 20190285 ~ 20196858 (+) True nop2
TU138600 other upstream 95929 20018699 ~ 20024983 (+) False casp2
TU138545 other upstream 192435 19924072 ~ 19928477 (+) True G120059
TU138435 other upstream 342577 19768270 ~ 19778335 (+) False LOC110537243
TU138669 other downstream 19399 20145733 ~ 20157110 (+) True zyx
TU138728 other downstream 44748 20171082 ~ 20171381 (+) True G120211
TU138741 other downstream 53074 20179408 ~ 20184625 (+) False LOC110537348
TU138791 other downstream 193405 20319739 ~ 20320256 (+) True G120259
TU138671 other downstream 281528 20407862 ~ 20419128 (+) True G120169

Expression Profile