RNA id: TU139748


Basic Information

Item Value
RNA id TU139748
length 1584
lncRNA type intronic
GC content 0.40
exon number 8
gene id G121030
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20121473 ~ 20126339 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccacatcactattctgtaccaccagtggtgttgattccAATACAacatcactatactgtaccaccagtggtgttgatacctacattataccacatcactattctgtaccaccagtggtgttgatacctacattataccacatcactattctgtaccaccagtggtgttgatacctacattataccacatcactattctgtactaccagtggtgttgatacctacattataccacatcactattctgtaccaccagtggtgttgatacctacattataccacatcactattctgtactaccagtggtgttgattcctACATTATACCACATCACtatactgtaccacCAGTGTTGTTGAAtcctataccacatcactattctgtaccaccagtggtgttgatacctacattacaccacatcactattctgtaccaccagtggtgttgattcctataccacatcactattctgtaccaccagtggtgttgattcctataccacatcactattctgtaccaccagtggtgttgattccAATACAACATCACTATTCTGTAacaccagtggtgttgattcctacattatatcacatcactattctgtaccaccagtggtgttgattccAATACAACATCACTATTCTGTAacaccagtggtgttgattcctacattatatcacatcactattctgtaacaccagtggtgttgattcctacattataacacatcactatactgtaccaccagtggtgttgattcctACATTATACCACATTGAGATACTATACCacctataccacatcactataaTGTACTATCAGTGGTGTTCATtcctataccacatcactattctgtaccaccagtggtgttgatacctacattacaccacatcactattctgtaccaccagtggtgttgattcctataccacatcactattctgtaccaccagtggtgttgattcctacattataccacatcactattctgtaccaccagtggtgttgattcctacattataccacatcactattctgtaccaccagtggtgttgattcctacattatactacatcactattctgtaccaccagtggtgttgattcctacattataccacatcactattctgtaccaccagtggtgttgattcctacattataccacatcactattctgtaccaccagtggtgttgattcctacattataccacatcactattctgtaccaccagtgatgttgattcctacattataccacatcactattctgtaccaccagtggtgttgattcctacattataccacatcactatactgtaccacCAGTGTTGTTGAAtcctataccacatcactattctgtaacaccagtggtgttgattcctacattataccacatcactattctgtaccaccagtggtgttgattcctacattataccacatcactattctgtaacaccagtggtgttgattcctacattataccacatcactattctgtaacaccagtggtgttgattcctacattataccacatcactattctgtaacaccagtggtgttgattcctacattacaccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139709 lncRNA downstream 45228 20069603 ~ 20076245 (-) True G121005
TU139687 lncRNA downstream 68301 20052654 ~ 20053172 (-) True G120997
TU139640 lncRNA downstream 167693 19953549 ~ 19953780 (-) True G120953
TU139609 lncRNA downstream 228822 19891200 ~ 19892651 (-) True G120925
TU139597 lncRNA downstream 239558 19880288 ~ 19881915 (-) True G120916
TU139758 lncRNA upstream 7083 20133422 ~ 20133686 (-) True G121036
TU139784 lncRNA upstream 19849 20146188 ~ 20156383 (-) True G121048
TU139797 lncRNA upstream 43862 20170201 ~ 20170409 (-) True G121061
TU139800 lncRNA upstream 48394 20174733 ~ 20175077 (-) True G121064
TU139822 lncRNA upstream 83093 20209432 ~ 20209636 (-) True G121086
XM_021623243.2 mRNA downstream 114630 20001127 ~ 20006843 (-) False LOC110537306
XM_021623252.2 mRNA downstream 114630 20001127 ~ 20006843 (-) True LOC110537306
XM_036933452.1 mRNA downstream 124252 19987402 ~ 19997221 (-) False gstk1
XM_036933463.1 mRNA downstream 124253 19987402 ~ 19997220 (-) False gstk1
XM_021590531.2 mRNA upstream 186287 20312626 ~ 20318150 (-) False LOC110509570
NM_001195275.1 mRNA upstream 227775 20354114 ~ 20356998 (-) True lag-3
NM_001124554.1 mRNA upstream 245766 20372105 ~ 20377151 (-) True tapbpl
XM_036941286.1 mRNA upstream 265638 20391977 ~ 20399493 (-) True LOC110503568
XM_036941300.1 mRNA upstream 287160 20413499 ~ 20420922 (-) False LOC118936525
TU139615 other downstream 193013 19924098 ~ 19928460 (-) True LOC110537275
TU139490 other downstream 425909 19693689 ~ 19695564 (-) True LOC118944062
TU139386 other downstream 633241 19484337 ~ 19488232 (-) False cacng6b
TU139389 other downstream 633241 19485649 ~ 19488232 (-) False cacng6b
TU138073 other downstream 1072443 19048307 ~ 19049030 (-) True G119663
TU139782 other upstream 84729 20211068 ~ 20212367 (-) True G121046
TU139863 other upstream 336343 20462682 ~ 20465789 (-) True LOC110509624
TU139931 other upstream 372557 20498896 ~ 20500587 (-) True G121188
TU139978 other upstream 500218 20626557 ~ 20627700 (-) True G121208
TU140219 other upstream 930259 21056598 ~ 21058849 (-) True G121421

Expression Profile