RNA id: TCONS_00028194


Basic Information

Item Value
RNA id TCONS_00028194
length 585
RNA type processed_transcript
GC content 0.48
exon number 2
gene id XLOC_014160
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 32807236 ~ 32820107 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTGCTAAGCCGGTGTCTATCCTGCGTGACCTGATCACAGAGGCGATGGATATGAAGGCCAAGAGACAGCAGGAGCAGCAGAGAGAGCTGGAGGAGGATGATGAGAACTCGGTGAGAGAATTCACTGACATTGCATATTACTTTGGTTTACGATGAgcaaagcatttgtgttttagcTAATATTGAATGTGACTGGCTTCTACAGGAGGAGGAAGTGGAAGTTGATTCCCACACGATGGTGAAGTCTGGTTCCGAGAGTGCTGGCACTATGAGAGCCACGGGCACCATGAGTGACGGGGCTCAGACTATGATTGAACATGGCAGCACCATGCTGGAGTCTAACCTGGGCACTATGGTTATCAACAGCGATGATGAGGAAGAAGAGGAAGATCTTGGCTCAATGAGAAGAAATCCTACGTCTCAACAAATCCAGCGTCCATCTTTCATGGACTACTTTGACAAGCAGGACTCAAACAAAGCACAAGAAGGATTCAATCACAACCAGCAGGACCCGTGTTTAATCTCCAAGACTGCTTTCCCTGATAACTGGAAAGTGCCTCAAGATGGAGATTTCGATTTCGTAAG

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0043010 camera-type eye development biological_process
GO:0035329 hippo signaling biological_process
GO:0023014 signal transduction by protein phosphorylation biological_process
GO:0032147 activation of protein kinase activity biological_process
GO:0006468 protein phosphorylation biological_process
GO:0031098 stress-activated protein kinase signaling cascade biological_process
GO:0016310 phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko04010 MAPK signaling pathway
ko04390 Hippo signaling pathway
ko04391 Hippo signaling pathway - fly
ko04392 Hippo signaling pathway - multiple species
ko04214 Apoptosis - fly
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-030131-2845 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within camera-type eye development. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Orthologous to human STK3 (serine/threonine kinase 3).

Ensembl:

ensembl_id ENSDART00000146342

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029971 lncRNA upstream 33402 32765283 ~ 32780918 (+) True XLOC_014159
TCONS_00029970 lncRNA upstream 95524 32716578 ~ 32718796 (+) True XLOC_014158
TCONS_00029969 lncRNA upstream 445808 32257615 ~ 32368512 (+) False XLOC_014155
TCONS_00029968 lncRNA upstream 844554 31954959 ~ 31969766 (+) True XLOC_014150
TCONS_00029965 lncRNA upstream 859592 31943508 ~ 31954728 (+) False XLOC_014149
TCONS_00028211 lncRNA downstream 646135 33464709 ~ 33477475 (+) False XLOC_014167
TCONS_00029972 lncRNA downstream 735039 33553613 ~ 33660936 (+) False XLOC_014168
TCONS_00029973 lncRNA downstream 735060 33553634 ~ 33690360 (+) False XLOC_014168
TCONS_00029974 lncRNA downstream 755740 33574314 ~ 33690360 (+) False XLOC_014168
TCONS_00029975 lncRNA downstream 977174 33795748 ~ 33798410 (+) True XLOC_014169
TCONS_00028192 mRNA upstream 195063 32603627 ~ 32619257 (+) True XLOC_014157
TCONS_00028191 mRNA upstream 253729 32553874 ~ 32560591 (+) True XLOC_014156
TCONS_00028187 mRNA upstream 352724 32257472 ~ 32461596 (+) False XLOC_014155
TCONS_00028188 mRNA upstream 352724 32321797 ~ 32461596 (+) False XLOC_014155
TCONS_00028189 mRNA upstream 352724 32401278 ~ 32461596 (+) False XLOC_014155
TCONS_00028195 mRNA downstream 3695 32822269 ~ 32838822 (+) False XLOC_014161
TCONS_00028196 mRNA downstream 3840 32822414 ~ 32838954 (+) False XLOC_014161
TCONS_00028197 mRNA downstream 3840 32822414 ~ 32884513 (+) True XLOC_014161
TCONS_00028198 mRNA downstream 36565 32855139 ~ 32860780 (+) False XLOC_014162
TCONS_00028199 mRNA downstream 38333 32856907 ~ 32860731 (+) True XLOC_014162
TCONS_00028183 other upstream 755721 32058477 ~ 32058599 (+) True XLOC_014151
TCONS_00028175 other upstream 1222780 31591524 ~ 31591540 (+) True XLOC_014144
TCONS_00028174 other upstream 1223829 31587931 ~ 31590491 (+) True XLOC_014142
TCONS_00028165 other upstream 1465972 31342023 ~ 31348348 (+) True XLOC_014139
TCONS_00028157 other upstream 1923310 30885312 ~ 30891010 (+) True XLOC_014132
TCONS_00028217 other downstream 913588 33732162 ~ 33765725 (+) False XLOC_014168
TCONS_00028221 other downstream 1317033 34135607 ~ 34135695 (+) True XLOC_014171
TCONS_00028225 other downstream 1388588 34207162 ~ 34207280 (+) True XLOC_014173
TCONS_00028229 other downstream 1924132 34742706 ~ 34746733 (+) False XLOC_014179
TCONS_00028237 other downstream 2960268 35778842 ~ 35778957 (+) True XLOC_014189

Expression Profile

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