RNA id: TU139777


Basic Information

Item Value
RNA id TU139777
length 2367
lncRNA type read_through
GC content 0.36
exon number 4
gene id G121044
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20213812 ~ 20249299 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTACTCACAGAGGACTTTTATTCCGCTTCTGAATGAAGCAGGTTCAGTGCAACAAACAGAGAAAATGTCTTCACACCCAGATTCCATCTCACCTTTCACAAGACCAGAACAGGGGCTttacaatacaaaaataaattaGTTGTGATTGTTAGTTATTTGTTTCATGCGGGTAACTTTCTCATGGCAAGGGCGATAGTCCAATCGAATGGGAAATATGTGGTCACATGACGTAGCGCAGTAGCGTTTGGTTGGTTGCTTTACTCCTTGGTGGCCATGTGAGCCATCAGGTCAATGACGCGGTTGCTGTAGCCAAACTCATTGTCatGTGACCAGCTTGACGAAGTGGTCGTTCAGAGCAATGCCAGCGCCGGCATCAAAGATGGAGGAGTGGGTGTCGCCGTTGAAGTCTGAAGAGACAACCTGTTGCTCCGTGTAGCCGAGAATTCCCTTCATGGGTCCATCGGCGGCAGCCTTGACAACCTTCTTGATGGCGTCGTAGCTGGCCTGTGGTTCAAGCAAACAAGAGGTGGGTTGTTAAATTGTTCCATTGTTGCTAAATTTACGATGCTAACTAATCATGTATCAATTAAGGCATTGTCTTGTCTACTCAACAATGGGCTTTACTCAATCTTTATTTAAAGACGTGGTCACTGTGTCTAACAACTGGTCCTAGGACAGTGTCATCTTTTTGATTGTATTGGCAGGTAAGGTACACCATAGAGACACAGACATGTGTATTGGCAGTTTGGtaaggcagggggaggggctactCACAGGCTTCTCCAGACGGACGGTCAGGTCCACCACTGAGACGTTGGGGGTGGGGACACGGAAGGCCATGCCAGTGATCTTGCGTTCAGCTCGGGGATGACCTTGCCGACAGCCTTGGCTGCTCCGGTGGAGGCAGGGATGATGTTCTGGCTGGCACCACGTCCATCCCTCCACAGCTTTCCAGAAGGACCATCAACAGTCTTCTGGGTGGCGGTGACGGCGTGAACGGTGCtctgagagagagatgttaagggaagggagatgagagaggtgtGATCCACATTAAGGAGGTACAGAAGTGGTAGTGGGGGACGGCTGGATAAGAAAAACAGAGATGGTGTGTTGGTGATCTTAAAAACAGTCCATCCCTTGTTCTGTACTGTTAGTGTTTTGTGTCGGTGTGAAACCTGTCGTTATGTCAGATTATGCCCTCTCTAGGTGATTGTTCCCAGGTGTTGCGTTTTAATCCGTACCATCAGACCCTCAATGATGTGGTAGTTATCGTGGATGACCTTGGCCAGGGGAGCCAGGCAGTTGGTTGTGCATGACGCATTGCTGTGGAGAGAGACGTGCTAAATTATAGTCTGAACCGCAACAGAATAGCCAGGCGCTGCATATAGTAGCTGTTAAGTGGAGGGAGTGTGTGTTGAGTCGGAGGGAAGAGGGACTCACCTGACAACCTTGAGGGAGTTCTCGTACTTCTCGTGGTTGACGCCCATGACGAACATGGGTGCATCAGCGCTGGGAGCAGAGATGACAACCCTCTTGGCACCTCCCTTCAGATGggtctggaggaggaggaggagggagagatgttaGAGtccattattacatttttttCCATTAAACATGCCATAACAACTATTCCTGCAGGATTAACAAGGACAATATTAGTCAAGAAAGACAACACTTTTAAATACTTAGTTTTAAATAAAGTGCAGGTTTACTGTCAAAACAACACTCAGAGACTTAAAATAGAATAACAGCTTGATGTAAACATAACTTTGATACTTTCAAGATTCAAATGAATAGATGTACAATATAAGTACAGCTAACCCCTTCCAACAGCCAGGAGACATACAGAGTAACTTTCTTTAAGCTCGATGGAACCACATTAGCAATACAGCAAGTACACTACAGCAAGTACACTACAGCTACGCTACATGTAGACCTCCTTTGTACTCACATTAACATCCCTGTATTCACCACGTGTGTAAATGACTGTGTGCTGTGTAGCAGCCTACTGTGTGTTCGTCCTCATATCCCCTGTGGGGCGTcagtcccttcctctctctccactagcaGCCCAGTCCACTCATTGACCCGATCCTGTCCAGTTTGAGCCCGAAGCATCCTCGGTTCCACCCCCTCCTCGACCGGTCCGTCACAGCTCTTTTCTGATTGGCCAGGGTCCCCTTCAGGAGGCGGAGCCAGGTGCTGTCGCCCTGTGCTGGTATGTCAGCCCATTTGGGGTACTCAGCGATTTTGACCCCGGAAGTAAAAGCAGAGGAGGGCTCCTCGGGTTGGCTGCTCACCAGGTTCTCCAGGTCATCCAGGGTCAGGTCGTTGTAGCGATCCAGAAACTGCTCAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139829 lncRNA downstream 7636 20222336 ~ 20223686 (-) True G121093
TU139823 lncRNA downstream 20886 20210156 ~ 20210436 (-) True G121087
TU139822 lncRNA downstream 21686 20209432 ~ 20209636 (-) True G121086
TU139800 lncRNA downstream 56245 20174733 ~ 20175077 (-) True G121064
TU139797 lncRNA downstream 60913 20170201 ~ 20170409 (-) True G121061
TU139888 lncRNA upstream 67341 20316640 ~ 20317850 (-) True LOC110509570
TU139890 lncRNA upstream 70440 20319739 ~ 20320263 (-) True G121152
TU139891 lncRNA upstream 95196 20344495 ~ 20344730 (-) True G121153
TU139898 lncRNA upstream 112924 20362223 ~ 20364183 (-) True G121160
TU139910 lncRNA upstream 179304 20428603 ~ 20434075 (-) True G121167
XM_036941164.1 mRNA downstream 99441 20094421 ~ 20131881 (-) False LOC110537330
XM_036941166.1 mRNA downstream 99441 20094421 ~ 20131881 (-) False LOC110537330
XM_036941174.1 mRNA downstream 99441 20094421 ~ 20131881 (-) False LOC110537330
XM_036941185.1 mRNA downstream 99441 20094421 ~ 20131881 (-) True LOC110537330
XM_021623252.2 mRNA downstream 224479 20001127 ~ 20006843 (-) True LOC110537306
XM_021590531.2 mRNA upstream 63327 20312626 ~ 20318150 (-) False LOC110509570
NM_001195275.1 mRNA upstream 104815 20354114 ~ 20356998 (-) True lag-3
NM_001124554.1 mRNA upstream 122806 20372105 ~ 20377151 (-) True tapbpl
XM_036941286.1 mRNA upstream 142678 20391977 ~ 20399493 (-) True LOC110503568
XM_036941300.1 mRNA upstream 164200 20413499 ~ 20420922 (-) False LOC118936525
TU139782 other downstream 18955 20211068 ~ 20212367 (-) True G121046
TU139615 other downstream 302862 19924098 ~ 19928460 (-) True LOC110537275
TU139490 other downstream 535758 19693689 ~ 19695564 (-) True LOC118944062
TU139386 other downstream 743090 19484337 ~ 19488232 (-) False cacng6b
TU139863 other upstream 213383 20462682 ~ 20465789 (-) True LOC110509624
TU139931 other upstream 249597 20498896 ~ 20500587 (-) True G121188
TU139978 other upstream 377258 20626557 ~ 20627700 (-) True G121208
TU140219 other upstream 807299 21056598 ~ 21058849 (-) True G121421
TU140354 other upstream 1039317 21288616 ~ 21346687 (-) True G121533

Expression Profile