Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00028196 |
| length | 1208 |
| RNA type | mRNA |
| GC content | 0.39 |
| exon number | 6 |
| gene id | XLOC_014161 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 32822269 ~ 32884513 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:1901565 | organonitrogen compound catabolic process | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0005739 | mitochondrion | cellular_component |
| GO:0019239 | deaminase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040718-315 | Predicted to enable deaminase activity. Predicted to be involved in organonitrogen compound catabolic process. Predicted to be active in cytosol and mitochondrion. Orthologous to human RIDA (reactive intermediate imine deaminase A homolog). |
| ensembl_id | ENSDART00000052096 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00029971 | lncRNA | upstream | 41496 | 32765283 ~ 32780918 (+) | True | XLOC_014159 |
| TCONS_00029970 | lncRNA | upstream | 103618 | 32716578 ~ 32718796 (+) | True | XLOC_014158 |
| TCONS_00029969 | lncRNA | upstream | 453902 | 32257615 ~ 32368512 (+) | False | XLOC_014155 |
| TCONS_00029968 | lncRNA | upstream | 852648 | 31954959 ~ 31969766 (+) | True | XLOC_014150 |
| TCONS_00029967 | lncRNA | upstream | 867686 | 31943627 ~ 31954728 (+) | True | XLOC_014149 |
| TCONS_00028211 | lncRNA | downstream | 625755 | 33464709 ~ 33477475 (+) | False | XLOC_014167 |
| TCONS_00029972 | lncRNA | downstream | 714659 | 33553613 ~ 33660936 (+) | False | XLOC_014168 |
| TCONS_00029973 | lncRNA | downstream | 714680 | 33553634 ~ 33690360 (+) | False | XLOC_014168 |
| TCONS_00029974 | lncRNA | downstream | 735360 | 33574314 ~ 33690360 (+) | False | XLOC_014168 |
| TCONS_00029975 | lncRNA | downstream | 956794 | 33795748 ~ 33798410 (+) | True | XLOC_014169 |
| TCONS_00028193 | mRNA | upstream | 2307 | 32807236 ~ 32820107 (+) | False | XLOC_014160 |
| TCONS_00028192 | mRNA | upstream | 203157 | 32603627 ~ 32619257 (+) | True | XLOC_014157 |
| TCONS_00028191 | mRNA | upstream | 261823 | 32553874 ~ 32560591 (+) | True | XLOC_014156 |
| TCONS_00028189 | mRNA | upstream | 360818 | 32401278 ~ 32461596 (+) | False | XLOC_014155 |
| TCONS_00028198 | mRNA | downstream | 16185 | 32855139 ~ 32860780 (+) | False | XLOC_014162 |
| TCONS_00028199 | mRNA | downstream | 17953 | 32856907 ~ 32860731 (+) | True | XLOC_014162 |
| TCONS_00028200 | mRNA | downstream | 108956 | 32947910 ~ 32966762 (+) | True | XLOC_014163 |
| TCONS_00028203 | mRNA | downstream | 140178 | 32979132 ~ 33070812 (+) | False | XLOC_014164 |
| TCONS_00028204 | mRNA | downstream | 140178 | 32979132 ~ 33070812 (+) | False | XLOC_014164 |
| TCONS_00028194 | other | upstream | 3840 | 32814320 ~ 32818574 (+) | True | XLOC_014160 |
| TCONS_00028183 | other | upstream | 763815 | 32058477 ~ 32058599 (+) | True | XLOC_014151 |
| TCONS_00028175 | other | upstream | 1230874 | 31591524 ~ 31591540 (+) | True | XLOC_014144 |
| TCONS_00028174 | other | upstream | 1231923 | 31587931 ~ 31590491 (+) | True | XLOC_014142 |
| TCONS_00028165 | other | upstream | 1474066 | 31342023 ~ 31348348 (+) | True | XLOC_014139 |
| TCONS_00028217 | other | downstream | 893208 | 33732162 ~ 33765725 (+) | False | XLOC_014168 |
| TCONS_00028221 | other | downstream | 1296653 | 34135607 ~ 34135695 (+) | True | XLOC_014171 |
| TCONS_00028225 | other | downstream | 1368208 | 34207162 ~ 34207280 (+) | True | XLOC_014173 |
| TCONS_00028229 | other | downstream | 1903752 | 34742706 ~ 34746733 (+) | False | XLOC_014179 |
| TCONS_00028237 | other | downstream | 2939888 | 35778842 ~ 35778957 (+) | True | XLOC_014189 |
