RNA id: TU139890


Basic Information

Item Value
RNA id TU139890
length 525
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G121152
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20319739 ~ 20320263 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTCccgtagttcttgaccaggtttgcacacactgtagcagggattttggcccaatcctccatacagaccttctccagatccttcaggttttggggctgtcgctgggcaatacggactttcagctccctccaaagatattttattgggttcaggtctggagactggctaggccactccaggaccttgagatgcttcttacggagccactccttagttgccctggctgtgtgtttcaggtcgttgtcatgatggaagacccagccacgacccatattcaatgctcttactgagggaaggaggttgttggccaagatctcgcgatacatggccccatccatcctcccctcaatacggtgcagtcgtcctgtcccctttgcagaaaagcatccccaaagaaggatgtttccacctccatgcttcacggttgggatggtgtgattcatacaatgtgattttctggatttctggatttttttctggattccgtctctcacagttgaagtgtacctatgataaaaatgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139888 lncRNA downstream 1889 20316640 ~ 20317850 (-) True LOC110509570
TU139777 lncRNA downstream 70440 20231322 ~ 20249299 (-) False G121044
TU139773 lncRNA downstream 70440 20245018 ~ 20249299 (-) False G121044
TU139774 lncRNA downstream 70440 20245018 ~ 20249299 (-) True G121044
TU139779 lncRNA downstream 86211 20231322 ~ 20233528 (-) False G121044
TU139891 lncRNA upstream 24232 20344495 ~ 20344730 (-) True G121153
TU139898 lncRNA upstream 41960 20362223 ~ 20364183 (-) True G121160
TU139910 lncRNA upstream 108340 20428603 ~ 20434075 (-) True G121167
TU139911 lncRNA upstream 108593 20428856 ~ 20434379 (-) True G121168
TU139917 lncRNA upstream 146889 20467152 ~ 20468133 (-) True G121174
XM_021590531.2 mRNA downstream 1589 20312626 ~ 20318150 (-) False LOC110509570
XM_036941164.1 mRNA downstream 187858 20094421 ~ 20131881 (-) False LOC110537330
XM_036941166.1 mRNA downstream 187858 20094421 ~ 20131881 (-) False LOC110537330
XM_036941174.1 mRNA downstream 187858 20094421 ~ 20131881 (-) False LOC110537330
XM_036941185.1 mRNA downstream 187858 20094421 ~ 20131881 (-) True LOC110537330
NM_001195275.1 mRNA upstream 33851 20354114 ~ 20356998 (-) True lag-3
NM_001124554.1 mRNA upstream 51842 20372105 ~ 20377151 (-) True tapbpl
XM_036941286.1 mRNA upstream 71714 20391977 ~ 20399493 (-) True LOC110503568
XM_036941300.1 mRNA upstream 93236 20413499 ~ 20420922 (-) False LOC118936525
XM_036941302.1 mRNA upstream 95826 20416089 ~ 20420924 (-) True LOC118936525
TU139782 other downstream 107372 20211068 ~ 20212367 (-) True G121046
TU139615 other downstream 391279 19924098 ~ 19928460 (-) True LOC110537275
TU139490 other downstream 624175 19693689 ~ 19695564 (-) True LOC118944062
TU139386 other downstream 831507 19484337 ~ 19488232 (-) False cacng6b
TU139863 other upstream 142419 20462682 ~ 20465789 (-) True LOC110509624
TU139931 other upstream 178633 20498896 ~ 20500587 (-) True G121188
TU139978 other upstream 306294 20626557 ~ 20627700 (-) True G121208
TU140219 other upstream 736335 21056598 ~ 21058849 (-) True G121421
TU140354 other upstream 968353 21288616 ~ 21346687 (-) True G121533

Expression Profile