RNA id: TU138690


Basic Information

Item Value
RNA id TU138690
length 1129
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G120188
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20325102 ~ 20326230 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggaaaaagcaGCAAGCAAGTTAGGTTCAAAAAATGGATTTTCACAAAGTCAAATACATTTATTGTGATATAGGTTTCTTGATGCTAGTTCTAGGTAAGTTTTAAAGTAGATAGTTTTAACACTTTtatacacaggaggttggtggcatcttatttgcggaggatgggctcgtggtaacaGCTGGACTGGAATGAGTGAAATGGTATCaagtacatcaaacacatggtttccattttttttattccaTTTGTTCCAGCCATTTTTATGAGCCGCCcgcccctcagcagcctccactggttttatacatcagttggggtctctataagctacaataggaggtcctaaacctagcatgaaagtgcacccttgtagctgtgtgggcaaATATAGTCAAATGGTTTCTTTGGGGTAAATTGTACCATAttgtgtatatgtaatgtatgtaaactttgtttaaactctgctgtctgtctctaaatgttgtccatcactagcagcaccatatcaccaagtCACATTCTGAGTATGTGTAAATGTACTTGGCGAATAACAGTGATTCTGATTGGGCGAGGGGCAAGTTGAGCCAATGTCTAATCAACACATCCCATACAAAGGATTACATTTAGTGTGTTTTATGCATAATATGAATAGTATTTTGAAGACACCTCGCATTTGAGTGATTAGTCAAGTTTAAAAGATGAAAAATGCCTTCCTCAGTTGAGTTTGTGACCCTCTTGGCCACAATTGGTGTTTTCTTCCGTAATACAATGCATTatcgctgggatatgaggtaatgtaaatgttttaaaatgtacagTTAGAAATGTTTCGCTATGCTTAGGCTCCCCTGTTCTCATACTCAATTTACTCCATACTCGGGGTCAATTGTGCCAAgagacaagctatgttttcaaaaggGTTGTTTACACGAATTCTGATTATGTCCAAGGACACACAACTCCTGAAATATacgtagatatctttgttagataCTATATTTCCTTGACGTAGTGATGATACTGAATGTAACAAATCGCTCAACatacccccctctcccctgttACTCCGATAGGCAGAGGGGGAATGTGTATTTAGCATTAGTCTACATCCCGATAAAATAAACAATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138786 lncRNA upstream 12337 20312400 ~ 20312765 (+) True G120254
TU138769 lncRNA upstream 54379 20268498 ~ 20270723 (+) True G120238
TU138668 lncRNA upstream 101466 20216218 ~ 20223636 (+) True LOC110534400
TU138686 lncRNA upstream 112731 20211456 ~ 20212371 (+) True G120184
TU138748 lncRNA upstream 139688 20185173 ~ 20185414 (+) True LOC110537348
TU138795 lncRNA downstream 14744 20340974 ~ 20341290 (+) True G120263
TU138800 lncRNA downstream 28508 20354738 ~ 20355147 (+) True G120268
TU138801 lncRNA downstream 28951 20355181 ~ 20355569 (+) True G120269
TU138802 lncRNA downstream 29401 20355631 ~ 20355980 (+) True G120270
TU138803 lncRNA downstream 29898 20356128 ~ 20356341 (+) True G120271
XM_021590486.2 mRNA upstream 14327 20298486 ~ 20310775 (+) False LOC110509548
XM_036941253.1 mRNA upstream 14327 20298486 ~ 20310775 (+) True LOC110509548
XM_036941241.1 mRNA upstream 27964 20259815 ~ 20297138 (+) False LOC110537377
XM_036941247.1 mRNA upstream 27964 20259815 ~ 20297138 (+) True LOC110537377
XM_036941250.1 mRNA upstream 32148 20259815 ~ 20292954 (+) False LOC110537377
XM_021590448.2 mRNA downstream 148 20326378 ~ 20337673 (+) True LOC110509528
XM_036941266.1 mRNA downstream 12022 20338252 ~ 20353846 (+) True plekhg6
XM_036941283.1 mRNA downstream 36187 20362417 ~ 20364212 (+) False LOC110509663
XM_021590660.2 mRNA downstream 38342 20364572 ~ 20372023 (+) True LOC110509646
XM_036941347.1 mRNA downstream 126552 20452782 ~ 20462007 (+) True LOC110509563
TU138791 other upstream 4846 20319739 ~ 20320256 (+) True G120259
TU138741 other upstream 140477 20179408 ~ 20184625 (+) False LOC110537348
TU138728 other upstream 153721 20171082 ~ 20171381 (+) True G120211
TU138669 other upstream 167992 20145733 ~ 20157110 (+) True zyx
TU138600 other upstream 300119 20018699 ~ 20024983 (+) False casp2
TU138671 other downstream 81632 20407862 ~ 20419128 (+) True G120169
TU139024 other downstream 574044 20900274 ~ 20973920 (+) False erfl3
TU139026 other downstream 648621 20974851 ~ 20976199 (+) True erfl3
TU139028 other downstream 665524 20991754 ~ 21015891 (+) True LOC110509768
TU140444 other downstream 1215867 21542097 ~ 21547034 (+) True LOC118938333

Expression Profile